Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq13 111 4e-19 >seq13 Length=8037603 Score = 111 bits (122), Expect = 4e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 |||||| | ||||||||||| ||| || |||| | | |||| || ||| | |||||| Sbjct 7607382 TTTCCATTACTCACAACAAAACGAGTATTTTGGCGTGCAGTTGTTGAGGAATTGCTGTGG 7607441 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 ||||| | || || || || || ||||| | | ||| ||| |||||||||||| Sbjct 7607442 TTTATCAGAGGCTCCACTAACGCGAAAGAACTATCCGATAAAGGTGTCAAAATTTGGGAT 7607501 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGAT 111494 | |||| ||| | | ||||| || ||| | ||| | |||| | || ||||| ||| Sbjct 7607502 GCCAATGCATCTAGAAAGTTTCTCGACTCATTGGGTTTCATCGATAGAGACGAAGGAGAT 7607561 Query 111495 CTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACA 111543 | || || |||| || ||||||||| | || | ||||||| | |||| Sbjct 7607562 TTAGGCCCGATTTATGGCTTTCAATGGAGACATTATGGTGCAAAATACA 7607610 Score = 104 bits (114), Expect = 6e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 |||||| | | ||||| || || || |||| |||| | ||||| ||| | || ||| Sbjct 7580851 TTTCCATTATTGACAACCAAACGTGTATTTTGGCGGGGAGTGGTCGAGGAATTACTTTGG 7580792 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 || ||| | || ||||||||||| ||| | | | |||| ||||| | ||||||||| Sbjct 7580791 TTCATTAGAGGTTCAACAAATGCAAAAGAATTATCTGAAAAAGATGTACACATTTGGGAT 7580732 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGAT 111494 | ||| | |||||||| ||| | |||| | | | ||| ||||| || ||| Sbjct 7580731 GCTAATAGTTCACGTGAATTTTTGGATTTATGTAAATTCACCGATCGAGAAGAGGGAGAT 7580672 Query 111495 CTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 | || || || || || ||||||||| | |||||||| ||| | || | || |||||| Sbjct 7580671 TTAGGCCCTGTGTATGGCTTTCAATGGAGACACTTTGGAGCAAAATATATAAATATGCAC 7580612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303312570021374