Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 >seq2 Length=17806784 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||||||||| | || || ||||| ||||| | ||| || | Sbjct 3493183 AATGCAAATTTTTGTCAAAACATTGACAGGTAAAACTATTACACTGGAAGTTGAAGCTTC 3493242 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| ||| ||| | | || ||| |||||| ||||||||||| | || ||||| Sbjct 3493243 CGATACTATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 3493302 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| | || |||| ||| || |||||||| ||||||| | ||| | |||| ||||| Sbjct 3493303 GCAACGTCTCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAACATTATCCGACTATAA 3493362 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| |||||||| || || Sbjct 3493363 CATCCAAAAAGAATCAAC 3493380 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115274 AAGAGATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA 115333 || || || || ||||| ||||| || ||||| | || || ||||| ||||| | || Sbjct 3491829 AATAGTTTCAAGATGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAG 3491888 Query 115334 ACGGAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTC 115393 ||| | ||||| ||| | || ||| ||||| ||||||||||| | Sbjct 3491889 GTAGAGGCATCAGACACCATTGAGAATGTTAAAGCCAAAATCCAGGATAAAGAAGGAATT 3491948 Query 115394 CCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATG 115453 ||| ||||||||| | || || | ||| || |||||||||||||||| | ||| | Sbjct 3491949 CCCCCAGATCAGCAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTT 3492008 Query 115454 GCCGATTATAACATTCAAAAAGAGTCTAC 115482 | ||||| || |||||||| || || || Sbjct 3492009 TCAGATTACAATATTCAAAAGGAATCAAC 3492037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115274 AAGAGATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA 115333 || || || || ||||| ||||| || ||||| | || || ||||| ||||| | || Sbjct 3492944 AATAGTTTCAAGATGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAG 3493003 Query 115334 ACGGAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTC 115393 ||| | ||||| ||| | || ||| ||||| ||||||||||| | Sbjct 3493004 GTAGAGGCATCAGACACCATTGAGAATGTTAAAGCCAAAATCCAGGATAAAGAAGGAATT 3493063 Query 115394 CCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATG 115453 ||| ||||||||| | || || | ||| || |||||||||||||||| | ||| | Sbjct 3493064 CCCCCAGATCAGCAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTT 3493123 Query 115454 GCCGATTATAACATTCAAAAAGAGTCTAC 115482 | ||||| || |||||||| || || || Sbjct 3493124 TCAGATTACAATATTCAAAAGGAATCAAC 3493152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425331263206840