Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 102 8e-17 >seq2 Length=17806784 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | |||||| |||||||| || | || ||||||||||| || ||||| || Sbjct 12206951 CCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAGAT 12207010 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || |||||||| || |||| | |||||||||||| || || Sbjct 12207011 AAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGA 12207070 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || || || ||||| | || | || || | | |||| Sbjct 12207071 ATGCCTTCTTTATCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207130 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | |||| ||||| || |||| || || |||||||| |||||| || Sbjct 12207131 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207181 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||||| || ||||| | || |||||||| || || ||||| ||| Sbjct 12207178 GCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207237 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||||| | ||||| || ||| | || | |||||||||||| || || Sbjct 12207238 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207297 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| || || ||||| | || | || || | | |||| Sbjct 12207298 AATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12207357 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | |||| ||||| || |||| || || |||||||| |||||| || Sbjct 12207358 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207409 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||||| || ||||| | || |||||||| || || ||||| ||| Sbjct 12207634 GCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207693 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||||| | ||||| || ||| | || | |||||||||||| || || Sbjct 12207694 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207753 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| || || ||||| | || | || || | | |||| Sbjct 12207754 AATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12207813 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | |||| ||||| || |||| || || |||||||| |||||| || Sbjct 12207814 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | || || ||||||||||| |||||||| | Sbjct 3492067 CCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATC--TG 3492010 Query 131068 ATGGTGCGCGAG--TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||| | | || |||| || || || || |||||| ||| ||||| || || | Sbjct 3492009 AAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGG 3491950 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCG 131184 | ||||||||||| || |||||| |||| | | | ||| | || || | | ||| Sbjct 3491949 GAATTCCTTCTTTATCCTGGATTTT-GGCTTTAACATTCTCAATGGTGTCTGATGCCTCT 3491891 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | |||| |||||||| || | ||||| |||||||||||||| Sbjct 3491890 ACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCAT 3491841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | || || ||||||||||| |||||||| | Sbjct 3493182 CCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATC--TG 3493125 Query 131068 ATGGTGCGCGAG--TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||| | | || |||| || || || || |||||| ||| ||||| || || | Sbjct 3493124 AAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGG 3493065 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCG 131184 | ||||||||||| || |||||| |||| | | | ||| | || || | | ||| Sbjct 3493064 GAATTCCTTCTTTATCCTGGATTTT-GGCTTTAACATTCTCAATGGTGTCTGATGCCTCT 3493006 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | |||| |||||||| || | ||||| |||||||||||||| Sbjct 3493005 ACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCAT 3492956 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 ||| || ||||| | || |||||||| || || ||||| ||| || || || || Sbjct 12207421 CAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATC 12207480 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| | ||||| || ||| | || | |||||||||||| || || || ||||||||||| Sbjct 12207481 CTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 12207540 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 || || ||||| | || | || || | | |||| || | |||| || Sbjct 12207541 CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGT 12207600 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| || |||| || || |||||||| |||||| || Sbjct 12207601 TTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207637 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 ||| || ||||| | || |||||||| || || ||||| ||| || || || || Sbjct 12207877 CAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATC 12207936 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| | ||||| || ||| | || | |||||||||||| || || || ||||||||||| Sbjct 12207937 CTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 12207996 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 || || ||||| | || | || || | | |||| || | |||| || Sbjct 12207997 CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGT 12208056 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| || |||| || || |||||||| |||||| || Sbjct 12208057 TTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208093 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 ||| || ||||| | || |||||||| || || ||||| ||| || || || || Sbjct 12208105 CAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATC 12208164 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| | ||||| || ||| | || | |||||||||||| || || || ||||||||||| Sbjct 12208165 CTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 12208224 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 || || ||||| | || | || || | | |||| || | |||| || Sbjct 12208225 CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGT 12208284 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| || |||| || || |||||||| |||||| || Sbjct 12208285 TTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208321 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 ||| || ||||| | || |||||||| || || ||||| ||| || || || || Sbjct 12208333 CAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATC 12208392 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| | ||||| || ||| | || | |||||||||||| || || || ||||||||||| Sbjct 12208393 CTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 12208452 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 || || ||||| | || | || || | | |||| || | |||| || Sbjct 12208453 CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGT 12208512 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| || |||| || || |||||||| |||||| || Sbjct 12208513 TTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208549 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 ||| || ||||| | || |||||||| || || ||||| ||| || || || || Sbjct 12208561 CAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATC 12208620 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| | ||||| || ||| | || | |||||||||||| || || || ||||||||||| Sbjct 12208621 CTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 12208680 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 || || ||||| | || | || || | | |||| || | |||| || Sbjct 12208681 CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGT 12208740 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| || |||| || || |||||||| |||||| || Sbjct 12208741 TTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208777 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 ||| || ||||| | || |||||||| || || ||||| ||| || || || || Sbjct 12208789 CAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATC 12208848 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| | ||||| || ||| | || | |||||||||||| || || || ||||||||||| Sbjct 12208849 CTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 12208908 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 || || ||||| | || | || || | | |||| || | |||| || Sbjct 12208909 CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGT 12208968 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| || |||| || || |||||||| |||||| || Sbjct 12208969 TTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12209005 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 ||| || ||||| | || |||||||| || || ||||| ||| || || || || Sbjct 12209017 CAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATC 12209076 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| | ||||| || ||| | || | |||||||||||| || || || ||||||||||| Sbjct 12209077 CTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 12209136 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || ||||| | || | || || | | |||| || | |||| || Sbjct 12209137 CTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACTTCAAGAGTAATTGT 12209196 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTT 131239 || || || | || ||||| || |||||||||| || Sbjct 12209197 CTTCCCAGTCAATGTCTTTACAAAGATCTGCATGATTT 12209234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471998303306880