Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq8 143 3e-29 >seq8 Length=10932247 Score = 143 bits (158), Expect = 3e-29 Identities = 221/313 (71%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196 || |||||||| || || ||||| || || | | ||||||| ||||||||||||||| Sbjct 3798658 TTACCTGTATTTTTCTTTAGATCAAGAAATTCAAATATATCAGCATGCCACGGTTCCAAA 3798599 Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256 || ||||| | | ||||| | || ||||| || ||||| | |||| || || ||| Sbjct 3798598 TACATGGCAAATGCCCCAGGTCTCTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 3798539 Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGA-TATA 63315 ||||||||||| | ||| |||| | ||||| ||| | ||||| || || | || | || Sbjct 3798538 TTATAAACTCTTATCATAGGAACTAAGCCATTCGATATTCCATTTGTGCCAGCGATTCTA 3798479 Query 63316 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 | | || | || | |||| || || | ||| || || ||||| |||| | Sbjct 3798478 G-TACCTTTTGCTCTAATAGTATGAACACTCAAACCAATGCCACCTGCAGATTTACTAAC 3798420 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 |||||| |||| |||||| |||||||| || || || || ||||| || |||| | || Sbjct 3798419 TAATGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGTTAG 3798360 Query 63436 TAGAAAACAGCTA 63448 || || || ||| Sbjct 3798359 AAGGAAGCAACTA 3798347 Score = 141 bits (156), Expect = 1e-28 Identities = 238/344 (69%), Gaps = 8/344 (2%) Strand=Plus/Minus Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651 |||| || || | |||||| || || | ||||||||| ||| ||||||||||||| Sbjct 3799590 TACCAATTGGACGATGTCTGAAGTTCGATCTCTCAGCTTCTTTAATTGGATAATAATTAA 3799531 Query 62652 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62711 ||| ||||| |||| | |||| | || |||||| || || |||| ||| ||| Sbjct 3799530 GATCAATAATCTTATCTAAATTTTGGGTAACAACTTTGGTAACTTCTTTCAATTTTTGAA 3799471 Query 62712 AATCAAATCGCCCATCTATT-------ACAAACATGTTCAATGCAACAGATGCCAGATTA 62764 | ||| | || | |||| |||||||| || | || | |||||| | |||| Sbjct 3799470 AGTCATA-CGTTTTTTTATTGACATTAACAAACATATTAACAGCGATAGATGCTAAATTA 3799412 Query 62765 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 62824 || || || || |||| | | | |||||| | | || || || |||||||||| Sbjct 3799411 CACACCGCCACTTCATCTGGAGAAGAATATTGCACAACTTCGGTACATAGATTACTACTT 3799352 Query 62825 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 62884 ||||||| || | ||| | |||||| ||| ||||||| ||| |||||||| ||| Sbjct 3799351 CTGATGGTACCAAGATTCTTTTGATTTGACTTCCTGTTACAATGATCTTTATAAAGCATG 3799292 Query 62885 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 62928 | |||||||||||||||| || || | || ||| || |||| Sbjct 3799291 TAAGGAGTACCAGTTTCAACTTGCGACTTTAAAATTGCAGTCCA 3799248 Score = 132 bits (146), Expect = 6e-26 Identities = 193/273 (71%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 ||||| ||| ||| | || ||||| ||| || || || |||| ||| | ||||| Sbjct 3800475 CTGAACGGAACCATTGTTAGCGATAATTTCATTTTTCATTTCTTCATCCCAAATATTTCT 3800416 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 ||||| ||| || | | | ||| |||||||| || ||||||||||| || | || | Sbjct 3800415 TTCGGTCAAATCTTTTAATAAATGAGGATTAACAACCTGAAATTCTCCCGAAAGAACGCG 3800356 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 | || || |||||||| || || ||||| | ||| |||||||| || | |||||||| Sbjct 3800355 TCTTGTATAGATATTACTCGTGTAAGGTTCGATAGATTCATTATTCCCAAGTATTTGAGC 3800296 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 || || || || ||||| || || | ||||| || | | ||| | | || || Sbjct 3800295 TGTAGAAGCTGTTGGCATTGGAGCAAGTAATAATGAGTTACGGATACCATCTTTTGCTAT 3800236 Query 62338 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62370 ||||||||||| || ||||||||||||||| Sbjct 3800235 TTTATCTTTTAAAGCACTCCAATTCCAAAGATC 3800203 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 63569 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63628 || || || | ||| | ||| |||||||| |||||||| | || || ||||| || Sbjct 3798079 ACCGCAACTCTCATAAGCATATGCTGAGGCCTTTCAACTACTTTTCCATTAATTTTTAAT 3798020 Query 63629 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63688 ||||| | ||||||| |||||||| |||||||| || || ||| |||| |||||| Sbjct 3798019 AAGTAACTTCTTTCCAATGTTTTAAATCCAAAATAATTATAACCAAAATCTCTATCGTAA 3797960 Query 63689 ATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 ||||| | || || | |||||| || | ||| Sbjct 3797959 ATAATGGCAGAATTAATTTTATCTTTGTGTTT 3797928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633612539577200