Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 129 5e-25 >seq2 Length=17806784 Score = 129 bits (142), Expect = 5e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || ||||| |||||| | || ||| | ||||| || | || Sbjct 3493183 AATGCAAATTTTTGTCAAAACATTGACAGGTAAAACTATTACACTGGAAGTTGAAGCTTC 3493242 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| || |||| || |||| ||| || |||||||| |||||||| || | Sbjct 3493243 CGATACTATTGAAAATGTGAAAGCTAAAATTCAA-GATAAAGAAGGAATTCCACCAGATC 3493301 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | ||||||||||| |||||||| ||||||| | || | ||| || | Sbjct 3493302 AGCAACGTCTCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAACATTATCCGACTATA 3493361 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 | || ||||||||||| ||||| ||| | || || | || | || |||| ||| Sbjct 3493362 ACATCCAAAAAGAATCAACGCTCCATCTTGTTCTTCGCCTTCGTGGTGGAATTTA 3493416 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| ||||| || || | || || | ||||| || | || Sbjct 12209229 ATGCAGATCTTTGTAAAGACATTGACTGGGAAGACAATTACTCTTGAAGTCGAAGCTTCA 12209170 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| ||||| |||||||| Sbjct 12209169 GACACAATAGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 12209110 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || || ||||| || |||| || ||| || ||| |||||| Sbjct 12209109 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12209050 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || ||||| || || || || |||||||| Sbjct 12209049 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12209003 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || || || ||| | || || | ||||| || | || Sbjct 12207633 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207574 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||||||||| ||||| ||||| Sbjct 12207573 GACACAATAGAAAATGTCA---AGGCTAAGATTCAG-GACAAAGAAGGCATTCCCCCTGA 12207518 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| || || || ||||| || |||| || ||| || ||| || Sbjct 12207517 CCAGCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTA 12207458 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || || || ||||| || || || || |||||||| Sbjct 12207457 CAATATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12207407 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || || || ||| | || || | ||||| || | || Sbjct 12208089 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208030 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||||||||| ||||| ||||| Sbjct 12208029 GACACAATAGAAAATGTCA---AGGCTAAGATTCAG-GACAAAGAAGGCATTCCCCCTGA 12207974 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| || || || ||||| || |||| || ||| || ||| || Sbjct 12207973 CCAGCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTA 12207914 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || || || ||||| || || || || |||||||| Sbjct 12207913 CAATATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12207863 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || || || ||| | || || | ||||| || | || Sbjct 12208317 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208258 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||||||||| ||||| ||||| Sbjct 12208257 GACACAATAGAAAATGTCA---AGGCTAAGATTCAG-GACAAAGAAGGCATTCCCCCTGA 12208202 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| || || || ||||| || |||| || ||| || ||| || Sbjct 12208201 CCAGCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTA 12208142 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || || || ||||| || || || || |||||||| Sbjct 12208141 CAATATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208091 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || || || ||| | || || | ||||| || | || Sbjct 12208545 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208486 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||||||||| ||||| ||||| Sbjct 12208485 GACACAATAGAAAATGTCA---AGGCTAAGATTCAG-GACAAAGAAGGCATTCCCCCTGA 12208430 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| || || || ||||| || |||| || ||| || ||| || Sbjct 12208429 CCAGCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTA 12208370 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || || || ||||| || || || || |||||||| Sbjct 12208369 CAATATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208319 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || || || ||| | || || | ||||| || | || Sbjct 12208773 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208714 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||||||||| ||||| ||||| Sbjct 12208713 GACACAATAGAAAATGTCA---AGGCTAAGATTCAG-GACAAAGAAGGCATTCCCCCTGA 12208658 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| || || || ||||| || |||| || ||| || ||| || Sbjct 12208657 CCAGCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTA 12208598 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || || || ||||| || || || || |||||||| Sbjct 12208597 CAATATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208547 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || || || ||| | || || | ||||| || | || Sbjct 12209001 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208942 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||||||||| ||||| ||||| Sbjct 12208941 GACACAATAGAAAATGTCA---AGGCTAAGATTCAG-GACAAAGAAGGCATTCCCCCTGA 12208886 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| || || || ||||| || |||| || ||| || ||| || Sbjct 12208885 CCAGCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTA 12208826 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || || || ||||| || || || || |||||||| Sbjct 12208825 CAATATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208775 Score = 118 bits (130), Expect = 9e-22 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || || || ||| | || || | ||||| || | || Sbjct 12207405 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207346 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||||||||| ||||| ||||| Sbjct 12207345 GACACAATAGAAAATGTCA---AGGCTAAGATTCAG-GACAAAGAAGGCATTCCCCCTGA 12207290 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| || || || ||||| || |||| || ||| || ||| || Sbjct 12207289 CCAGCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTA 12207230 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || || || ||||| || || | || |||||||| Sbjct 12207229 CAATATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGG 12207179 Score = 118 bits (130), Expect = 9e-22 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || || || ||| | || || | ||||| || | || Sbjct 12207861 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207802 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||||||||| ||||| ||||| Sbjct 12207801 GACACAATAGAAAATGTCA---AGGCTAAGATTCAG-GACAAAGAAGGCATTCCCCCTGA 12207746 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| || || || ||||| || |||| || ||| || ||| || Sbjct 12207745 CCAGCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTA 12207686 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || || || || || ||||| || || | || |||||||| Sbjct 12207685 CAATATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGG 12207635 Score = 107 bits (118), Expect = 2e-18 Identities = 122/161 (76%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || || || || ||| ||||||| | ||||| || | || Sbjct 3492068 AATGCAAATTTTTGTTAAAACCTTAACTGGCAAAACCATCACGTTGGAAGTTGAAGCTTC 3492127 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| ||||| || | || |||| || | || ||||||||||| |||||||| || Sbjct 3492128 TGATACTATTGAA--AATGTTAAAGCGAAGATCCAA-GACAAAGAAGGAATTCCACCAGA 3492184 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 ||||| || | ||||||||||| |||||||| ||||||| Sbjct 3492185 TCAACAACGTCTCATTTTTGCCGGTAAACAATTGGAAGATG 3492225 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| |||||| | || || | || || ||| | || Sbjct 3491841 ATGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAGGTAGAGGCATCA 3491900 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| || || |||||||| ||||| || || Sbjct 3491901 GACACCATTGAG--AATGTTAAAGCCAAAATCCAG-GATAAAGAAGGAATTCCCCCAGAT 3491957 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| || |||||||||||||||| | | || | |||||| Sbjct 3491958 CAGCAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTTTCAGATTAC 3492017 Query 25176 AATATTCAAAAAGAATCCAC 25195 ||||||||||| ||||| || Sbjct 3492018 AATATTCAAAAGGAATCAAC 3492037 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| |||||| | || || | || || ||| | || Sbjct 3492956 ATGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAGGTAGAGGCATCA 3493015 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| || || |||||||| ||||| || || Sbjct 3493016 GACACCATTGAG--AATGTTAAAGCCAAAATCCAG-GATAAAGAAGGAATTCCCCCAGAT 3493072 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| || |||||||||||||||| | | || | |||||| Sbjct 3493073 CAGCAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTTTCAGATTAC 3493132 Query 25176 AATATTCAAAAAGAATCCAC 25195 ||||||||||| ||||| || Sbjct 3493133 AATATTCAAAAGGAATCAAC 3493152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433315024128455