Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 149 7e-31 seq11 116 4e-21 seq2 114 1e-20 >seq3 Length=17417032 Score = 149 bits (164), Expect = 7e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420 |||||| || ||||| | || ||||||||||| ||||| ||||| ||||| || | ||| Sbjct 7878192 TATGTAAGTGTCGATGAGTAGGGAATACATTTCGGAATGAACATTTTCCATCGCCACTTG 7878133 Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 ||| || ||||| |||| ||| || |||||||| ||||| || || | ||| ||||| Sbjct 7878132 GAAGCCATAGAAGCATCGAGCCTCTGTGATCTGGACTTCCTGGCTGAAGCGCTCGACGAG 7878073 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540 ||| ||||| || |||||||||||||| || || ||||| | | || |||||||| Sbjct 7878072 ATTCTCATTCACAATACCATCGGATGCGGCGAAGAAAGCAAGAACGTGGGAGATAAAATG 7878013 Query 93541 TTTCTCATCATCTTTAAGCTTATCCCAATCGGATA 93575 ||||| | || || | | | ||||||||||| Sbjct 7878012 CTTCTCTTTCTCGTTTAATTGTTGCCAATCGGATA 7877978 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 |||| || |||||||| || || || |||||||||||||| || || ||||||||||| | Sbjct 7877877 CTTTGGAGAGATCGACCTCCTCTACCGTCCAAAACGATGCCTCCGCCTTTTTGTACATCT 7877818 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 ||| || || | ||||||||||||| | |||||||| ||| || ||||||| | Sbjct 7877817 GCCAAATATCGGGCCATTGAATTGGAAAGACCACAAAACGTCCAGGATTTTCTTTTAAAA 7877758 Query 93699 ACGGCTCTAGTTGTGGGTCAAA 93720 ||||| | ||| || ||||| Sbjct 7877757 GAGGCTCCAATTGGGGATCAAA 7877736 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 ||||||| || || |||| ||||| |||||||| | || || | ||||||| || | Sbjct 7878544 CTTCGTCCCGCGAAATCAGTTCATTACTGAATGTCAGTCCAGGCATTAGTCCTCTCTTTT 7878485 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | ||||| ||||| | ||| ||||| ||| || || || || || || || ||||| | Sbjct 7878484 TCAGCCAGAATATGGCAGCGAAACTGCCACTGAAGAAGATTCCCTCGACCGCAGCAAAGG 7878425 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | | | || |||||||| | || | | | ||||| || |||||||||| | Sbjct 7878424 CAATTACGCGCTCGGCAAACGTAGCACTCTCGTGGTTAATCCAGTTCAAAGCCCAATTAG 7878365 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 ||||||| | || || ||||||||||| ||||| |||||| Sbjct 7878364 CTTTTTTAGCTACGCAGGGCAGTGTTTCGATGGCGTTGAATAGG 7878321 >seq11 Length=9115147 Score = 116 bits (128), Expect = 4e-21 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 7011184 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCTGGGAGCGTGG 7011243 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||| | |||| |||| || Sbjct 7011244 GTTCGAACCCCACACTTAGCAAAATATTTTT 7011274 >seq2 Length=17806784 Score = 114 bits (126), Expect = 1e-20 Identities = 73/77 (95%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 3517459 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCTGGGAGCGTGG 3517400 Query 126327 GTTCGAACCCCACACCT 126343 ||||||||||||||||| Sbjct 3517399 GTTCGAACCCCACACCT 3517383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556843697412680