Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 147 2e-30 seq34 86.0 5e-12 >seq2 Length=17806784 Score = 147 bits (162), Expect = 2e-30 Identities = 186/255 (73%), Gaps = 7/255 (3%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || |||||||| | || || ||||| ||| | || Sbjct 3493184 ATGCAAATTTTTGTCAAAACATTGACAGGTAAAACTATTACACTGGAAGTTGAAGCTTCC 3493243 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || || || |||||||| ||||| Sbjct 3493244 GATACTATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 3493303 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||| ||||| || || ||| | || | ||||| || ||| Sbjct 3493304 CAACGTCTCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAACATTATCCGACTATAAC 3493363 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCATTTTAA 22458 || ||||||||||| || | ||| | ||| | || | || || || | ||||| Sbjct 3493364 ATCCAAAAAGAATCAACGCTCCATCTTGTTCTTCGCCTTCGTGGTGG------AATTTAA 3493417 Query 22459 AATTATATTATATAC 22473 | || ||||| |||| Sbjct 3493418 ATTTTTATTA-ATAC 3493431 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| ||||| || ||||| |||| | ||||| ||| | | Sbjct 3492069 ATGCAAATTTTTGTTAAAACCTTAACTGGCAAAACCATCACGTTGGAAGTTGAAGCTTCT 3492128 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || || |||||||| || || |||||||| |||||| Sbjct 3492129 GATACTATTGAAAATGTTAAAGCGAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAA 3492188 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 |||||||| || |||||||| ||||| || || ||| Sbjct 3492189 CAACGTCTCATTTTTGCCGGTAAACAATTGGAAGAT 3492224 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || ||||| || ||||| | ||||||||||| ||| | | Sbjct 12207405 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207346 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||||| ||||| || || ||||| || || || Sbjct 12207345 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207286 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || || || |||||| || || | ||||| ||||| Sbjct 12207285 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207226 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||||| ||| ||||| || | ||||| Sbjct 12207225 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGG 12207179 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || ||||| || ||||| | ||||||||||| ||| | | Sbjct 12207861 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207802 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||||| ||||| || || ||||| || || || Sbjct 12207801 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207742 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || || || |||||| || || | ||||| ||||| Sbjct 12207741 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207682 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||||| ||| ||||| || | ||||| Sbjct 12207681 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGG 12207635 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || ||||| || ||||| | ||||||||||| ||| | | Sbjct 12207633 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207574 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||||| ||||| || || ||||| || || || Sbjct 12207573 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207514 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || || || |||||| || || | ||||| ||||| Sbjct 12207513 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207454 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||||| ||| || || || | ||||| Sbjct 12207453 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12207407 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || ||||| || ||||| | ||||||||||| ||| | | Sbjct 12208089 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208030 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||||| ||||| || || ||||| || || || Sbjct 12208029 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207970 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || || || |||||| || || | ||||| ||||| Sbjct 12207969 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207910 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||||| ||| || || || | ||||| Sbjct 12207909 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12207863 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || ||||| || ||||| | ||||||||||| ||| | | Sbjct 12208317 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208258 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||||| ||||| || || ||||| || || || Sbjct 12208257 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208198 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || || || |||||| || || | ||||| ||||| Sbjct 12208197 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208138 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||||| ||| || || || | ||||| Sbjct 12208137 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208091 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || ||||| || ||||| | ||||||||||| ||| | | Sbjct 12208545 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208486 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||||| ||||| || || ||||| || || || Sbjct 12208485 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208426 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || || || |||||| || || | ||||| ||||| Sbjct 12208425 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208366 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||||| ||| || || || | ||||| Sbjct 12208365 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208319 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || ||||| || ||||| | ||||||||||| ||| | | Sbjct 12208773 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208714 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||||| ||||| || || ||||| || || || Sbjct 12208713 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208654 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || || || |||||| || || | ||||| ||||| Sbjct 12208653 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208594 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||||| ||| || || || | ||||| Sbjct 12208593 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208547 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || ||||| || ||||| | ||||||||||| ||| | | Sbjct 12209001 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208942 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||||| ||||| || || ||||| || || || Sbjct 12208941 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208882 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || || || |||||| || || | ||||| ||||| Sbjct 12208881 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208822 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||||| ||| || || || | ||||| Sbjct 12208821 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208775 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || ||||| || ||||| | ||||||||||| ||| | | Sbjct 12207177 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207118 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||||| || || || || ||||| || || || Sbjct 12207117 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGATAAAGAAGGCATTCCCCCAGACCAG 12207058 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| || | |||||| || || | || || ||||| Sbjct 12207057 CAGCGTCTGATCTTTGCTGGCAAGCAACTCGAGGATGGACGTACTTTATCTGACTACAAT 12206998 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || || | || ||||| | || ||| | || || Sbjct 12206997 ATCCAAAAGGAGTCTACGCTTCACTTAGTGCTTCGTTTGAGAGGTGG 12206951 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || | ||||||||||| ||| | | Sbjct 12209229 ATGCAGATCTTTGTAAAGACATTGACTGGGAAGACAATTACTCTTGAAGTCGAAGCTTCA 12209170 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || || ||||| || || ||||| || || || Sbjct 12209169 GACACAATAGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 12209110 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || || || |||||| || || | ||||| ||||| Sbjct 12209109 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12209050 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||||| ||| || || || | ||||| Sbjct 12209049 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12209003 >seq34 Length=1613596 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || |||||||||||||| || || || | || || ||||| ||| | | Sbjct 773131 ATGCAAATCTTCGTTAAAACTTTAACAGGGAAGACTATTACCCTAGAAGTAGAAGCATCA 773072 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || || ||||| || || || || || || |||||| Sbjct 773071 GATACGATTGAAAATGTGAAAGCTAAGATACAAGATAAAGAAGGCATCCCTCCAGATCAA 773012 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| | || || || || | || || || || Sbjct 773011 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGACGGTCGTACTTTATCTGACTATAAT 772952 Query 22399 ATTCAAAAAG 22408 |||||||||| Sbjct 772951 ATTCAAAAAG 772942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419715431376205