Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2 122 7e-23 seq34 84.2 2e-11 >seq2 Length=17806784 Score = 122 bits (134), Expect = 7e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||||| ||| ||||| | || || || || || || ||||| ||| || |||||| Sbjct 12207416 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12207475 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || | ||| ||||||||| | || |||||||| ||||| || |||||||||||| Sbjct 12207476 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12207535 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| |||||| || | | ||| | ||||| | | |||||| || | || Sbjct 12207536 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12207595 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 | |||||||| || | || || || ||||| |||||| || Sbjct 12207596 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207637 Score = 122 bits (134), Expect = 7e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||||| ||| ||||| | || || || || || || ||||| ||| || |||||| Sbjct 12207872 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12207931 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || | ||| ||||||||| | || |||||||| ||||| || |||||||||||| Sbjct 12207932 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12207991 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| |||||| || | | ||| | ||||| | | |||||| || | || Sbjct 12207992 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12208051 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 | |||||||| || | || || || ||||| |||||| || Sbjct 12208052 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208093 Score = 122 bits (134), Expect = 7e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||||| ||| ||||| | || || || || || || ||||| ||| || |||||| Sbjct 12208100 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12208159 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || | ||| ||||||||| | || |||||||| ||||| || |||||||||||| Sbjct 12208160 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12208219 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| |||||| || | | ||| | ||||| | | |||||| || | || Sbjct 12208220 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12208279 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 | |||||||| || | || || || ||||| |||||| || Sbjct 12208280 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208321 Score = 122 bits (134), Expect = 7e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||||| ||| ||||| | || || || || || || ||||| ||| || |||||| Sbjct 12208328 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12208387 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || | ||| ||||||||| | || |||||||| ||||| || |||||||||||| Sbjct 12208388 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12208447 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| |||||| || | | ||| | ||||| | | |||||| || | || Sbjct 12208448 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12208507 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 | |||||||| || | || || || ||||| |||||| || Sbjct 12208508 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208549 Score = 122 bits (134), Expect = 7e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||||| ||| ||||| | || || || || || || ||||| ||| || |||||| Sbjct 12208556 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12208615 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || | ||| ||||||||| | || |||||||| ||||| || |||||||||||| Sbjct 12208616 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12208675 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| |||||| || | | ||| | ||||| | | |||||| || | || Sbjct 12208676 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12208735 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 | |||||||| || | || || || ||||| |||||| || Sbjct 12208736 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208777 Score = 122 bits (134), Expect = 7e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||||| ||| ||||| | || || || || || || ||||| ||| || |||||| Sbjct 12208784 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12208843 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || | ||| ||||||||| | || |||||||| ||||| || |||||||||||| Sbjct 12208844 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12208903 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| |||||| || | | ||| | ||||| | | |||||| || | || Sbjct 12208904 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12208963 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 | |||||||| || | || || || ||||| |||||| || Sbjct 12208964 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12209005 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||||| ||| ||||| | || || || || || || ||||| ||| || |||||| Sbjct 12209012 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12209071 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || | ||| ||||||||| | || |||||||| ||||| || |||||||||||| Sbjct 12209072 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12209131 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| ||||| || | | ||| | ||||| | | |||||| || | || Sbjct 12209132 TTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACTTCAAGAGTA 12209191 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 | || || || |||| || |||||||| ||||||||| Sbjct 12209192 ATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCATG 12209230 Score = 116 bits (128), Expect = 3e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||| || ||| ||||| | || || || || || || ||||| ||| || |||||| Sbjct 12207188 AGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12207247 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || | ||| ||||||||| | || |||||||| ||||| || |||||||||||| Sbjct 12207248 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12207307 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| |||||| || | | ||| | ||||| | | |||||| || | || Sbjct 12207308 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12207367 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 | |||||||| || | || || || ||||| |||||| || Sbjct 12207368 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207409 Score = 116 bits (128), Expect = 3e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||| || ||| ||||| | || || || || || || ||||| ||| || |||||| Sbjct 12207644 AGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12207703 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || | ||| ||||||||| | || |||||||| ||||| || |||||||||||| Sbjct 12207704 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12207763 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| |||||| || | | ||| | ||||| | | |||||| || | || Sbjct 12207764 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12207823 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 | |||||||| || | || || || ||||| |||||| || Sbjct 12207824 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207865 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 |||| || ||||| || | | ||| | ||| | ||| ||||||||||| ||||| || | Sbjct 3493415 AAATTCCACCACGAAGGCGAAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGT 3493356 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 || | || | |||||| | ||||||||| || | |||||||| || || || | Sbjct 3493355 CGGATAATGTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTG 3493296 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | ||||| |||||||| || ||| || ||| | | ||||| || |||| | || Sbjct 3493295 GTGGAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTT 3493236 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || |||| || | ||||| || |||| ||||| |||||||| ||||| Sbjct 3493235 CAACTTCCAGTGTAATAGTTTTACCTGTCAATGTTTTGACAAAAATTTGCAT 3493184 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| || | |||||| || ||||| || ||||| || | |||||| ||| || Sbjct 12206969 ACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAGATAAAGTACGTCCATCCTCG 12207028 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 ||||| || ||||| |||| |||||||| ||||| || |||||||||||||| || | Sbjct 12207029 AGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCTTTATCCTGA 12207088 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | ||| | ||||| | | |||||| || | || | |||||| Sbjct 12207089 ATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTG 12207148 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | || || || ||||| |||||| || Sbjct 12207149 CCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207181 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | ||| | || ||||| |||||||| |||||||| Sbjct 3492070 ATTCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCT 3492011 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | |||||| | |||||||||||| |||| ||||| || || || || Sbjct 3492010 GAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGG 3491951 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTC 114331 ||||| |||||||| || || ||| | |||| | | |||| |||||| | | || Sbjct 3491950 GGAATTCCTTCTTTATCCTGGAT-TTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTC 3491892 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || |||| ||||| || ||||||||||| Sbjct 3491891 TACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCAT 3491841 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | ||| | || ||||| |||||||| |||||||| Sbjct 3493185 ATTCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCT 3493126 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | |||||| | |||||||||||| |||| ||||| || || || || Sbjct 3493125 GAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGG 3493066 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTC 114331 ||||| |||||||| || || ||| | |||| | | |||| |||||| | | || Sbjct 3493065 GGAATTCCTTCTTTATCCTGGAT-TTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTC 3493007 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || |||| ||||| || ||||||||||| Sbjct 3493006 TACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCAT 3492956 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | ||||||||| || | |||||||| ||||| || || ||||| |||||||| Sbjct 3492224 ATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTT 3492165 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| ||||| ||| | | ||||| || || | | ||| || |||| || | Sbjct 3492164 GTCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCCAACGTGAT 3492105 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||||| || | ||||| |||||||| ||||| Sbjct 3492104 GGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCAT 3492069 >seq34 Length=1613596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||||||||| || || || | ||||||| |||||||||||||| ||||| | | Sbjct 772942 CTTTTTGAATATTATAGTCAGATAAAGTACGACCGTCTTCAAGTTGTTTTCCAGCAAAAA 773001 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 | | | ||||| || ||||| ||||||||||| || ||||| ||| | | || Sbjct 773002 TTAATCTTTGTTGATCTGGAGGGATGCCTTCTTTATCTTGTATCTTAGCTTTCACATTTT 773061 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 ||| || || | | ||| || || | ||| | || || || || | |||||| || | Sbjct 773062 CAATCGTATCTGATGCTTCTACTTCTAGGGTAATAGTCTTCCCTGTTAAAGTTTTAACGA 773121 Query 114373 AAATCTGCATGGCTTAATTAT 114393 | || ||||| | | |||||| Sbjct 773122 AGATTTGCATTG-TCAATTAT 773141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420121819206684