Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq13 113 4e-20 >seq13 Length=8037603 Score = 113 bits (124), Expect = 4e-20 Identities = 178/255 (70%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 20242 AGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCC 20301 ||| || ||||||| ||| |||| | |||| ||| ||||| || ||||||||||| Sbjct 7609778 AGTCACGTGAGCAATCATGCAAGTAAGTAGGGCATACGAAGCAATATTGAAAGGAACTCC 7609719 Query 20302 CAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATA 20361 ||| ||||| || || | ||| ||||| || ||||| || | || |||| | || || Sbjct 7609718 CAATCCCATATCACCTGCCCTTTGATAAAGATGACAAGATAATTCGCCGTTACACACGTA 7609659 Query 20362 AAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCA 20421 ||||| | | | | |||||||| || || ||||||| || | || || ||||| Sbjct 7609658 GAATTGCGAGAGCGAATGACAGGGTGGGAGAGCCATCATCGGTATATCTATTGGATTCCA 7609599 Query 20422 CGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGA 20481 | || ||||||||||| || || | || || ||||| ||| || | || || || Sbjct 7609598 AGAACTCATAATGATTCGCCTGTCATTGGGGTTGTTTTTAATTTTGTCTATAACGTCCGC 7609539 Query 20482 CAATTGGTCAAACCC 20496 || || ||||| || Sbjct 7609538 CAGCTGATCAAAACC 7609524 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 20248 ATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACC 20307 |||||||| ||| || || || | ||||| ||||||||||| || || || | ||| Sbjct 7579962 ATGAGCAATCATGTATGTCAATAAAGAATAAGAAGCAATGTTAAATGGCACACCGAGACC 7580021 Query 20308 CATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTG 20367 || || | || || || || ||||| ||||| ||||| || |||||||||||||| Sbjct 7580022 TATATCGGCGCTTCTTTGGTAAAGTTGACAAGAAAGTTCACCATCGGCTACATAAAATTG 7580081 Query 20368 ACATAACAA-GTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCAC 20426 | | || || ||||| || ||||| ||||| | | ||| || ||||| |||| Sbjct 7580082 A-ACAAGAATATGACAAGGAGGAAGAGCCATTTTTGGAATGTCAATTGGATTCCAAGCAC 7580140 Query 20427 ACATAATGATTCTTCTATC 20445 |||| || |||| ||||| Sbjct 7580141 ACATTATTATTCGCCTATC 7580159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441359244337880