Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1552 107 2e-18 seq2 95.1 1e-14 >seq1552 Length=401 Score = 107 bits (118), Expect = 2e-18 Identities = 86/100 (86%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 243 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 302 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 303 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 342 Score = 107 bits (118), Expect = 2e-18 Identities = 86/100 (86%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 243 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 302 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 303 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 342 >seq2 Length=17806784 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| ||||| |||| |||||| || ||||||||| || ||||| || | | Sbjct 12207179 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207238 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || ||||||||||| || || || ||||| |||||||| || || Sbjct 12207239 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207298 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || ||||||||| ||| || ||| | | | || | || |||| | Sbjct 12207299 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207358 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || |||||||| || |||| ||| || || || |||||||| Sbjct 12207359 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207405 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| ||||| |||| |||||| || ||||||||| || ||||| || | | Sbjct 12207635 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207694 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || ||||||||||| || || || ||||| |||||||| || || Sbjct 12207695 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207754 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || ||||||||| ||| || ||| | | | || | || |||| | Sbjct 12207755 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207814 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || |||||||| || |||| ||| || || || |||||||| Sbjct 12207815 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207861 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| | ||| |||| |||||| || ||||||||| || ||||| || | | Sbjct 12207407 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207466 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || ||||||||||| || || || ||||| |||||||| || || Sbjct 12207467 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207526 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || ||||||||| ||| || ||| | | | || | || |||| | Sbjct 12207527 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207586 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || |||||||| || |||| ||| || || || |||||||| Sbjct 12207587 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207633 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| | ||| |||| |||||| || ||||||||| || ||||| || | | Sbjct 12207863 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207922 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || ||||||||||| || || || ||||| |||||||| || || Sbjct 12207923 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207982 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || ||||||||| ||| || ||| | | | || | || |||| | Sbjct 12207983 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208042 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || |||||||| || |||| ||| || || || |||||||| Sbjct 12208043 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208089 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| | ||| |||| |||||| || ||||||||| || ||||| || | | Sbjct 12208091 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208150 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || ||||||||||| || || || ||||| |||||||| || || Sbjct 12208151 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208210 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || ||||||||| ||| || ||| | | | || | || |||| | Sbjct 12208211 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208270 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || |||||||| || |||| ||| || || || |||||||| Sbjct 12208271 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208317 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| | ||| |||| |||||| || ||||||||| || ||||| || | | Sbjct 12208319 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208378 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || ||||||||||| || || || ||||| |||||||| || || Sbjct 12208379 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208438 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || ||||||||| ||| || ||| | | | || | || |||| | Sbjct 12208439 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208498 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || |||||||| || |||| ||| || || || |||||||| Sbjct 12208499 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208545 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| | ||| |||| |||||| || ||||||||| || ||||| || | | Sbjct 12208547 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208606 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || ||||||||||| || || || ||||| |||||||| || || Sbjct 12208607 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208666 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || ||||||||| ||| || ||| | | | || | || |||| | Sbjct 12208667 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208726 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || |||||||| || |||| ||| || || || |||||||| Sbjct 12208727 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208773 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| | ||| |||| |||||| || ||||||||| || ||||| || | | Sbjct 12208775 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208834 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || ||||||||||| || || || ||||| |||||||| || || Sbjct 12208835 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208894 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || ||||||||| ||| || ||| | | | || | || |||| | Sbjct 12208895 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208954 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || |||||||| || |||| ||| || || || |||||||| Sbjct 12208955 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12209001 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| | ||| |||| |||||| || ||||||||| || ||||| || | | Sbjct 12209003 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12209062 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || ||||||||||| || || || ||||| |||||||| || || Sbjct 12209063 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12209122 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||||||||| Sbjct 12209123 ATGCCTTCTTTGTCC 12209137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397050510090514