Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 156 1e-32 seq34 125 2e-23 >seq2 Length=17806784 Score = 156 bits (172), Expect = 1e-32 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || ||||| | ||| |||||||||||| |||||||||| Sbjct 3493411 TCCACCACGAAGGCGAAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGA 3493352 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || | ||| ||||| |||||||| || || || || ||||| || ||| ||| Sbjct 3493351 TAATGTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGG 3493292 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||||||||| || ||||| |||||||| ||||| |||| |||| | ||| || Sbjct 3493291 AATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAAC 3493232 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || || || || || || |||| || ||||| || || |||||| Sbjct 3493231 TTCCAGTGTAATAGTTTTACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183 Score = 134 bits (148), Expect = 3e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| || || | ||||| || || || |||||||| ||||||| || || ||| Sbjct 12209012 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12209071 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || || || ||||| || || ||||| ||||||||||| || | || || |||||| Sbjct 12209072 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12209131 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || |||||||| || || || || |||||||| | || | ||| ||||| || || Sbjct 12209132 TTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACTTCAAGAGTA 12209191 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTT 288479 || |||||||| |||| ||||| || || |||||||| || || Sbjct 12209192 ATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCATGATTTT 12209235 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || ||||| | || ||| ||||| ||||| || || | Sbjct 3492068 TCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGA 3492009 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | || |||||||||||||| || || ||||| ||||| || ||| ||||| Sbjct 3492008 AAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGA---TCTGG 3491952 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||||||||||||||||||||| ||||| || || || || | || | || Sbjct 3491951 GGGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTC 3491892 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || || || || || |||| || || ||||| |||||||| Sbjct 3491891 TACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCAT 3491841 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || ||||| | || ||| ||||| ||||| || || | Sbjct 3493183 TCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGA 3493124 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | || |||||||||||||| || || ||||| ||||| || ||| ||||| Sbjct 3493123 AAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGA---TCTGG 3493067 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||||||||||||||||||||| ||||| || || || || | || | || Sbjct 3493066 GGGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTC 3493007 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || || || || || |||| || || ||||| |||||||| Sbjct 3493006 TACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCAT 3492956 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| || || | ||||| || || || |||||||| ||||||| || || ||| Sbjct 12207416 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12207475 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || || || ||||| || || ||||| ||||||||||| || | || || |||||| Sbjct 12207476 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12207535 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || ||||| || || || || || |||||||| | || | ||| ||||| || || Sbjct 12207536 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12207595 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || | ||||| ||||| || ||||| Sbjct 12207596 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207633 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| || || | ||||| || || || |||||||| ||||||| || || ||| Sbjct 12207872 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12207931 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || || || ||||| || || ||||| ||||||||||| || | || || |||||| Sbjct 12207932 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12207991 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || ||||| || || || || || |||||||| | || | ||| ||||| || || Sbjct 12207992 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12208051 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || | ||||| ||||| || ||||| Sbjct 12208052 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208089 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| || || | ||||| || || || |||||||| ||||||| || || ||| Sbjct 12208100 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12208159 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || || || ||||| || || ||||| ||||||||||| || | || || |||||| Sbjct 12208160 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12208219 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || ||||| || || || || || |||||||| | || | ||| ||||| || || Sbjct 12208220 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12208279 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || | ||||| ||||| || ||||| Sbjct 12208280 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208317 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| || || | ||||| || || || |||||||| ||||||| || || ||| Sbjct 12208328 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12208387 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || || || ||||| || || ||||| ||||||||||| || | || || |||||| Sbjct 12208388 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12208447 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || ||||| || || || || || |||||||| | || | ||| ||||| || || Sbjct 12208448 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12208507 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || | ||||| ||||| || ||||| Sbjct 12208508 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208545 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| || || | ||||| || || || |||||||| ||||||| || || ||| Sbjct 12208556 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12208615 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || || || ||||| || || ||||| ||||||||||| || | || || |||||| Sbjct 12208616 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12208675 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || ||||| || || || || || |||||||| | || | ||| ||||| || || Sbjct 12208676 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12208735 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || | ||||| ||||| || ||||| Sbjct 12208736 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208773 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| || || | ||||| || || || |||||||| ||||||| || || ||| Sbjct 12208784 AGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGT 12208843 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || || || ||||| || || ||||| ||||||||||| || | || || |||||| Sbjct 12208844 CCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCT 12208903 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || ||||| || || || || || |||||||| | || | ||| ||||| || || Sbjct 12208904 TTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTA 12208963 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || | ||||| ||||| || ||||| Sbjct 12208964 ATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12209001 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||| || || ||||| || || ||||| || || ||||| Sbjct 12207215 TCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAA 12207274 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | || || |||||||| ||||| || || || || || ||| Sbjct 12207275 ATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTT 12207334 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| | || | ||| ||||| || || || || || || || | ||||| ||| Sbjct 12207335 TCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACG 12207394 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 12207395 AAAATTTGCAT 12207405 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||| || || ||||| || || ||||| || || ||||| Sbjct 12207671 TCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAA 12207730 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | || || |||||||| ||||| || || || || || ||| Sbjct 12207731 ATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTT 12207790 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| | || | ||| ||||| || || || || || || || | ||||| ||| Sbjct 12207791 TCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACG 12207850 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 12207851 AAAATTTGCAT 12207861 Score = 109 bits (120), Expect = 1e-18 Identities = 168/237 (71%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 ||||| |||||| | | | ||| || | |||| ||| || ||||||||||| || Sbjct 12206945 TACAT-TCCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTA 12207003 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 ||| | | || ||||| || || | ||| || || || |||||||||||||| || Sbjct 12207004 GTCAGATAAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTG--- 12207060 Query 288360 ATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 |||||| || |||||||||||||| || || || || || |||||||| | || Sbjct 12207061 GTCTGGGGGAATGCCTTCTTTATCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGA 12207120 Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| ||||| || || || || || || || | ||||| ||||| || ||||| Sbjct 12207121 AGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207177 Score = 104 bits (114), Expect = 6e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 288315 TCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTC 288374 ||| ||||| |||||||| || || || || ||||| |||||| ||| |||||||| Sbjct 3492227 TCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTC 3492168 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434 ||| || ||||| |||||||| || ||||| |||| ||| | ||| ||||| | ||| Sbjct 3492167 TTTGTCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCCAACGT 3492108 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || || || || | || || || || || |||||| Sbjct 3492107 GATGGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCATT 3492068 >seq34 Length=1613596 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||| ||||||||||| | | || || |||||||| | ||||||||| || || | Sbjct 772942 CTTTTTGAATATTATAGTCAGATAAAGTACGACCGTCTTCAAGTTGTTTTCCAGCAAAAA 773001 Query 288344 TCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 | | | ||||| |||| ||||| ||||||||||| || || || |||||||| | Sbjct 773002 TTAATCTTTGTTG---ATCTGGAGGGATGCCTTCTTTATCTTGTATCTTAGCTTTCACAT 773058 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 |||| || | ||| | ||||||||| || || || |||||||| || | ||| || | Sbjct 773059 TTTCAATCGTATCTGATGCTTCTACTTCTAGGGTAATAGTCTTCCCTGTTAAAGTTTTAA 773118 Query 288461 CGAATATCTGCATT 288474 |||| || |||||| Sbjct 773119 CGAAGATTTGCATT 773132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179617264110846