Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 5e-14 >seq8 Length=10932247 Score = 93.3 bits (102), Expect = 5e-14 Identities = 231/348 (66%), Gaps = 2/348 (1%) Strand=Plus/Minus Query 114311 CCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCTCCACGGGATAAAAATTCCT 114369 |||||||| |||||||| | || || || || ||| | | |||||| |||| Sbjct 3799588 CCAATTGGACGATGTCTGAAGTTCGATCTCTC-AGCTTCTTTAATTGGATAATAATTAAG 3799530 Query 114370 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 114429 ||| |||| | ||| || ||||| ||| ||||| || || | ||| | | |||| | Sbjct 3799529 ATCAATAATCTTATCTAAATTTTGGGTAACAACTTTGGTAACTTCTTTCAATTTTTGAAA 3799470 Query 114430 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 114489 ||| | | | | |||| ||| || || || ||||| || || | |||||| Sbjct 3799469 GTCATACGTTTTTTTATTGACATTAACAAACATATTAACAGCGATAGATGCTAAATTACA 3799410 Query 114490 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTT 114549 ||| | ||||| | || || | | || ||| ||||| | ||| ||| | Sbjct 3799409 CACCGCCACTTCATCTGGAGAAGAATATTGCACAACTTCGGTACATAGATTACTACTTCT 3799350 Query 114550 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 114609 ||||| || | ||||||||||||||||| ||||||| ||| || ||||||||||| Sbjct 3799349 GATGGTACCAAGATTCTTTTGATTTGACTTCCTGTTACAATGATCTTTATAAAGCATGTA 3799290 Query 114610 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATC 114657 || || || || || ||| ||||| | ||| || |||| | ||| Sbjct 3799289 AGGAGTACCAGTTTCAACTTGCGACTTTAAAATTGCAGTCCATAAATC 3799242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597335253777560