Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013
-12-04] 2,457 sequences; 277,059,195 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq2 120 3e-22
>seq2
Length=17806784
Score = 120 bits (132), Expect = 3e-22
Identities = 157/215 (73%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||| | ||| ||||||||||| ||||| || || | | || | | ||
Sbjct 3493396 AAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGATAATGTTCTTCCATC 3493337
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| | || || |||||| ||||||| || ||||| || || |||||||||||||| ||
Sbjct 3493336 TTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATC 3493277
Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409
||| ||||| ||||| ||| || | ||||| || || ||||| | || | |
Sbjct 3493276 TTGAATTTTA-GCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCCAGTGTAATAG 3493218
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
| || || ||||| ||||| || ||||||||||||
Sbjct 3493217 TTTTACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || | ||| | |||||||| |||| ||| || || ||||| || ||||| || |
Sbjct 12206951 CCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAGAT 12207010
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || || |||||||| ||| | || || ||||||||||| || |||
Sbjct 12207011 AAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGA 12207070
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| |||||||| || || || || ||| ||| || | ||| || || || |||
Sbjct 12207071 ATGCCTTCTTTATCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207130
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | || ||||| || || || || ||||||||||||||
Sbjct 12207131 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207177
Score = 105 bits (116), Expect = 7e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||| | || ||||| |||||||| |||||||||| | || | | ||
Sbjct 3492053 AAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATC 3491994
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| | || || || ||| | || || || ||||| || || |||||||||||||| ||
Sbjct 3491993 TTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATC 3491934
Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409
|| | |||| ||||| ||| ||| | || || || || || || | ||| | |
Sbjct 3491933 CTGGA-TTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAG 3491875
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
| || || ||||| ||||| |||||||| ||||| ||
Sbjct 3491874 TTTTACCAGTCAAGGTTTTAACGAAAATCTGCATCTT 3491838
Score = 105 bits (116), Expect = 7e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||| | || ||||| |||||||| |||||||||| | || | | ||
Sbjct 3493168 AAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATC 3493109
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| | || || || ||| | || || || ||||| || || |||||||||||||| ||
Sbjct 3493108 TTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATC 3493049
Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409
|| | |||| ||||| ||| ||| | || || || || || || | ||| | |
Sbjct 3493048 CTGGA-TTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAG 3492990
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
| || || ||||| ||||| |||||||| ||||| ||
Sbjct 3492989 TTTTACCAGTCAAGGTTTTAACGAAAATCTGCATCTT 3492953
Score = 96.9 bits (106), Expect = 3e-15
Identities = 117/157 (75%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348
||||| | || || |||||| ||||||| || || || || || ||||||||||||||
Sbjct 3492223 TCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 3492164
Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACT-GTATCACCGGCGTCCACTTCTACAGTTAC 64407
||||| || || |||||| | | || | |||||| || || ||||| | || |
Sbjct 3492163 TCTTGGATCTTC-GCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCCAACGTGAT 3492105
Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| ||||| || || ||||| || ||||||||||||
Sbjct 3492104 GGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCATT 3492068
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || | || ||| || || | ||||| || || || || || || ||||| || |
Sbjct 12207407 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207466
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || | ||||| || || |||| || ||||||||||| || |||
Sbjct 12207467 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207526
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| |||||||| || || || || ||| ||| || | ||| || || || |||
Sbjct 12207527 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207586
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | || ||||| || || || || ||||||||||||||
Sbjct 12207587 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207633
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || | || ||| || || | ||||| || || || || || || ||||| || |
Sbjct 12207863 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207922
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || | ||||| || || |||| || ||||||||||| || |||
Sbjct 12207923 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207982
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| |||||||| || || || || ||| ||| || | ||| || || || |||
Sbjct 12207983 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208042
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | || ||||| || || || || ||||||||||||||
Sbjct 12208043 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208089
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || | || ||| || || | ||||| || || || || || || ||||| || |
Sbjct 12208091 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208150
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || | ||||| || || |||| || ||||||||||| || |||
Sbjct 12208151 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208210
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| |||||||| || || || || ||| ||| || | ||| || || || |||
Sbjct 12208211 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208270
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | || ||||| || || || || ||||||||||||||
Sbjct 12208271 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208317
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || | || ||| || || | ||||| || || || || || || ||||| || |
Sbjct 12208319 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208378
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || | ||||| || || |||| || ||||||||||| || |||
Sbjct 12208379 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208438
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| |||||||| || || || || ||| ||| || | ||| || || || |||
Sbjct 12208439 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208498
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | || ||||| || || || || ||||||||||||||
Sbjct 12208499 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208545
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || | || ||| || || | ||||| || || || || || || ||||| || |
Sbjct 12208547 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208606
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || | ||||| || || |||| || ||||||||||| || |||
Sbjct 12208607 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208666
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| |||||||| || || || || ||| ||| || | ||| || || || |||
Sbjct 12208667 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208726
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | || ||||| || || || || ||||||||||||||
Sbjct 12208727 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208773
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || | || ||| || || | ||||| || || || || || || ||||| || |
Sbjct 12208775 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208834
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || | ||||| || || |||| || ||||||||||| || |||
Sbjct 12208835 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208894
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| |||||||| || || || || ||| ||| || | ||| || || || |||
Sbjct 12208895 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208954
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | || ||||| || || || || ||||||||||||||
Sbjct 12208955 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12209001
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || | ||||| || || || || || || ||||| || | | || || | ||
Sbjct 12207194 AGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATCC 12207253
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | ||||| || || |||| || ||||||||||| || ||||| |||||||| ||
Sbjct 12207254 TCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 12207313
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | ||| || || || ||||| | ||| | ||
Sbjct 12207314 TGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTT 12207373
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| || || || || ||||||||||||||
Sbjct 12207374 TTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207405
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || | ||||| || || || || || || ||||| || | | || || | ||
Sbjct 12207650 AGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCATCC 12207709
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | ||||| || || |||| || ||||||||||| || ||||| |||||||| ||
Sbjct 12207710 TCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 12207769
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | ||| || || || ||||| | ||| | ||
Sbjct 12207770 TGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTT 12207829
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| || || || || ||||||||||||||
Sbjct 12207830 TTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207861
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || | || ||| || || | ||||| || || || || || || ||||| || |
Sbjct 12209003 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12209062
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || | ||||| || || |||| || ||||||||||| || |||
Sbjct 12209063 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12209122
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| |||||||| || || || || ||| ||| || | ||| || || || |||
Sbjct 12209123 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACT 12209182
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | ||||| || ||||| || ||||| || || |||||
Sbjct 12209183 TCAAGAGTAATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 12209229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499629454659080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |