Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 102 8e-17 >seq2 Length=17806784 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || | || ||| ||||| | |||||||||| || || ||||||||| Sbjct 12209002 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12209061 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| ||||| | ||| ||||| | | || |||||||| ||||| || || Sbjct 12209062 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12209121 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | | ||| | ||||| | | || || Sbjct 12209122 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGAC 12209181 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||||| || |||||||| ||||||||| Sbjct 12209182 TTCAAGAGTAATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCATG 12209230 Score = 100 bits (110), Expect = 3e-16 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--TCCTCGAGTTGTTTACC 138476 |||| ||||||||||| ||||| || | | ||| | | || || | ||||||||| Sbjct 3492036 TTGATTCCTTTTGAATATTGTAATC--TGAAAGTGTTCTACCATCTTCTAATTGTTTACC 3491979 Query 138477 GGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTT 138536 | | |||||||||| || || || || || || |||||||| || |||||| ||| Sbjct 3491978 AGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCTTT 3491919 Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | | || | |||||| | | ||| ||||| | || | ||||||||||||| || Sbjct 3491918 AACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGT 3491859 Query 138597 TTTTACAAAAATCTGCAT 138614 ||| || ||||||||||| Sbjct 3491858 TTTAACGAAAATCTGCAT 3491841 Score = 100 bits (110), Expect = 3e-16 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--TCCTCGAGTTGTTTACC 138476 |||| ||||||||||| ||||| || | | ||| | | || || | ||||||||| Sbjct 3493151 TTGATTCCTTTTGAATATTGTAATC--TGAAAGTGTTCTACCATCTTCTAATTGTTTACC 3493094 Query 138477 GGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTT 138536 | | |||||||||| || || || || || || |||||||| || |||||| ||| Sbjct 3493093 AGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCTTT 3493034 Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | | || | |||||| | | ||| ||||| | || | ||||||||||||| || Sbjct 3493033 AACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGT 3492974 Query 138597 TTTTACAAAAATCTGCAT 138614 ||| || ||||||||||| Sbjct 3492973 TTTAACGAAAATCTGCAT 3492956 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || |||| ||| ||||| | |||||||||| || || ||||||||| Sbjct 12207178 GCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207237 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| ||||| | ||| ||||| | | || |||||||| ||||| || || Sbjct 12207238 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207297 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | || | | ||| | ||||| | | || | Sbjct 12207298 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12207356 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | || | ||||| || || | || || || ||||| |||||| || Sbjct 12207357 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207409 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || |||| ||| ||||| | |||||||||| || || ||||||||| Sbjct 12207634 GCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207693 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| ||||| | ||| ||||| | | || |||||||| ||||| || || Sbjct 12207694 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207753 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | || | | ||| | ||||| | | || | Sbjct 12207754 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12207812 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | || | ||||| || || | || || || ||||| |||||| || Sbjct 12207813 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207865 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | ||||| || | | ||||||||||| || |||||||| Sbjct 12206951 CCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAGAT 12207010 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||||| || || | | |||| |||||||| ||||| || || Sbjct 12207011 AAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGA 12207070 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| | || | || | | ||| | ||||| | | || || Sbjct 12207071 ATGCCTTCTTTATC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12207129 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | ||||| || || | || || || ||||| |||||| || Sbjct 12207130 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207181 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || | || ||| ||||| | |||||||||| || || ||||||||| Sbjct 12207406 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207465 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| ||||| | ||| ||||| | | || |||||||| ||||| || || Sbjct 12207466 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207525 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | || | | ||| | ||||| | | || | Sbjct 12207526 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12207584 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | || | ||||| || || | || || || ||||| |||||| || Sbjct 12207585 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207637 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || | || ||| ||||| | |||||||||| || || ||||||||| Sbjct 12207862 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207921 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| ||||| | ||| ||||| | | || |||||||| ||||| || || Sbjct 12207922 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207981 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | || | | ||| | ||||| | | || | Sbjct 12207982 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208040 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | || | ||||| || || | || || || ||||| |||||| || Sbjct 12208041 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208093 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || | || ||| ||||| | |||||||||| || || ||||||||| Sbjct 12208090 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208149 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| ||||| | ||| ||||| | | || |||||||| ||||| || || Sbjct 12208150 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12208209 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | || | | ||| | ||||| | | || | Sbjct 12208210 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208268 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | || | ||||| || || | || || || ||||| |||||| || Sbjct 12208269 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208321 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || | || ||| ||||| | |||||||||| || || ||||||||| Sbjct 12208318 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208377 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| ||||| | ||| ||||| | | || |||||||| ||||| || || Sbjct 12208378 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12208437 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | || | | ||| | ||||| | | || | Sbjct 12208438 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208496 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | || | ||||| || || | || || || ||||| |||||| || Sbjct 12208497 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208549 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || | || ||| ||||| | |||||||||| || || ||||||||| Sbjct 12208546 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208605 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| ||||| | ||| ||||| | | || |||||||| ||||| || || Sbjct 12208606 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12208665 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | || | | ||| | ||||| | | || | Sbjct 12208666 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208724 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | || | ||||| || || | || || || ||||| |||||| || Sbjct 12208725 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208777 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || | || ||| ||||| | |||||||||| || || ||||||||| Sbjct 12208774 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208833 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| ||||| | ||| ||||| | | || |||||||| ||||| || || Sbjct 12208834 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12208893 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | || | | ||| | ||||| | | || | Sbjct 12208894 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208952 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | || | ||||| || || | || || || ||||| |||||| || Sbjct 12208953 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12209005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496247158541040