Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq64 1294 0.0 seq1277 309 1e-79 seq434 156 2e-33 >seq64 Length=39090 Score = 1294 bits (1434), Expect = 0.0 Identities = 1099/1342 (82%), Gaps = 15/1342 (1%) Strand=Plus/Minus Query 34114 GTGAAGCCA-TAGGCGGCCTTGCCTCC-TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTT 34171 ||||||||| || | ||| | ||| ||||||||||||| ||||||||| ||| |||| Sbjct 11101 GTGAAGCCAGTATTGGAACTTTCATCCATGAACCGCCCCGGTTTTCCTGGATAGTATTTT 11042 Query 34172 ATCTGTGTAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCATAATAAGCTTTTTCT 34231 | ||| | ||||||||||||||| || | || ||||||||||||||||| || | ||| Sbjct 11041 AGCTGGG-AACTCAGGCTGCCAGCTCCTTATTCCCGATGGAAGCATAATATGCCTGTTCG 10983 Query 34232 GCTTCTGCCGGAGGAGTATGGCCCAGCCTTCCCAGCAATCGTCGATTGTTATACCAGTCC 34291 ||||||||||| || |||| ||||||||| |||||| || || ||||| ||||||||| Sbjct 10982 GCTTCTGCCGGTGGGATATGCCCCAGCCTTTCCAGCAGCCGGCGGTTGTTGTACCAGTCC 10923 Query 34292 ACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAGCTCTTACGGTGTATT 34351 |||||||| ||||| ||||| |||||||| || ||| |||||||||| ||||| ||||| Sbjct 10922 ACCCACGTCAGTGTCGCCAGCTCCACTTCGGCGCGGGTTTTCCAGCTTTTACGATGTATA 10863 Query 34352 ACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCT 34411 ||||||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||| Sbjct 10862 ACCTCCGCTTTGTAAAGTCCGTTGATGCTCTCTGCCATTGCGTTGTCATATGAGTCGCCG 10803 Query 34412 GTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGAC 34471 || || || ||||||||||| | || || || || || || | ||| || ||||| ||| Sbjct 10802 GTGCTGCCCGTTGATGCCAGCAGCCCTGCGTCCTTAAGCCGTTGCGTGTACGCCAGCGAC 10743 Query 34472 ACATACTGAGAGCCTTTATCGCTGTGATGGATGGTGCCAGACGG-ACGACGGGCCCACAA 34530 ||||||||||||||||||||||||||||||||||| || ||||| ||| | ||||||||| Sbjct 10742 ACATACTGAGAGCCTTTATCGCTGTGATGGATGGTCCC-GACGGGACGTCTGGCCCACAA 10684 Query 34531 CGCCTGCTCCAGCGCATCCAGCACGAATGTCGTTTCCATAGACGATGAGACCCGCCACCC 34590 ||||||||| |||||||||| ||||| || |||||||| ||||||||||||||||| || Sbjct 10683 TGCCTGCTCCGGCGCATCCAGTACGAACGTTGTTTCCATCGACGATGAGACCCGCCATCC 10624 Query 34591 CACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGT 34650 ||||||| ||||| |||||||| ||||| ||||||||||| ||||||||||| | || Sbjct 10623 CACGATGCGACCGGCGAACACATCGATGATGAACGCCACATACGCGAAGCCCTGCAAGGT 10564 Query 34651 GCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGCGG 34710 |||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||| | Sbjct 10563 GCTGACACAGGTAAAATCAGCCACCCACAGCTGGTCAGGCCGTTCGGCCACGAACTGGCG 10504 Query 34711 CTTTACGCGGTCGCCTGCGGCAACGGCTTTCCGGCTGATGGTCGTACGGACCTTTTTACC 34770 || || ||||| |||| ||| | |||| ||||||| ||| || || |||||||| || Sbjct 10503 GTTCACACGGTCATCTGCAGCAGCCTCTTTACGGCTGACGGTGGTTCGTACCTTTTTGCC 10444 Query 34771 CCGGAGAACACCGGCAAGTCCCATAACCGCCATGAGACGTGCCACTGTACATCTGGCCAC 34830 |||| | || || || | ||||| || ||| || ||| |||| |||||||||||| | Sbjct 10443 CCGGCGTACCCCTGCCCGCCCCATCGCCTTCATCAGCCGTTCCACGGTACATCTGGCCGC 10384 Query 34831 CCTGATTCCTTCCCGTAACAACTGACGCCAGACTTTACGCACACCGTACAC-CTGATGAT 34889 ||||| |||||| | ||||||||||||||| || || || || ||||| ||| || | Sbjct 10383 GCTGATGTGTTCCCGGAGCAACTGACGCCAGACCTTGCGGACGCCATACACACTG-TGGT 10325 Query 34890 TTTCATCGTATACGCGCTGTATCTCTCTCTTCAGCCAGTCGTCGTGCTGCGCACGGGCAC 34949 ||||||| || || ||||||||||| | |||||| || ||| |||| |||| | | Sbjct 10324 TTTCATCATACACACGCTGTATCTCCGTTTTCAGCAGGTGGTCACGCTGTTCACGCGGGC 10265 Query 34950 TGCGTTTATCCGGATG-ATGTCGCTGTTGCTGACAATGGTAATACGTTGACGGGGCAATA 35008 |||| | |||||||| ||| || || |||||| | ||||||| || |||||||| ||| Sbjct 10264 TGCGCCTGTCCGGATGCATG-CGGTGGTGCTGATACCGGTAATATGTCGACGGGGCGATA 10206 Query 35009 TGCAGTTCGCTGCATACCGGTCCGACCCCGTACTGCTCACGCAGCTTATCCAGCAGTGGC 35068 | |||||| |||||||||||||||||| | || | |||||| |||||| ||| || Sbjct 10205 TCCAGTTCCTGGCATACCGGTCCGACCCCATGCTCATTACGCAGGGTATCCACCAGAGGG 10146 Query 35069 ATCATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAA 35128 |||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 10145 GCTATTTTTTCCAGAGGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGTCGCA 10086 Query 35129 GGATATCGTTACTGCGGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGAC 35188 ||||||||||||||||||||||||| || ||||||||||||||||| || |||||||| | Sbjct 10085 GGATATCGTTACTGCGGCGCAGTTCGCGGTTTTCACGTTCCAGCTCCTTGAGACGCTGGC 10026 Query 35189 GTTCAGCGCTGGTGAGCCCACCATCACCGCCCCCGGTATCCCGCTCATGCTGGCGAACCC 35248 |||||| | ||||||| || || ||| |||| ||| || ||||||||||||| || Sbjct 10025 GTTCAGTGGTGGTGAGTCCGCCGTCA------CCGGCATCACGTTCATGCTGGCGAAGCC 9972 Query 35249 AGACACGCAGAGTCTCCGGCGTACAGCCAATCTTTGGGGCAATGGAACAAATTGCCGCCC 35308 || || || |||||||| |||||||| || || ||||| | || | || || |||| Sbjct 9971 AGGTGCGAAGCGTCTCCGGTGTACAGCCGATTTTGGGGGCGACAGAGCTGATGGCAGCCC 9912 Query 35309 ACTGTGAGTCATATTCATCCTGACTTTCCAGAACCATACGAATCGCCCGCTGACGGACTT 35368 | ||||||||||| || | ||| | ||| | ||||| ||||| |||||||||||||| | Sbjct 9911 ATTGTGAGTCATAGTCGTTCTGGCCTTCGATAACCAGACGAACGGCCCGCTGACGGACCT 9852 Query 35369 CGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCAGGGAGTTTAGTCT 35428 | |||||||| || ||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 9851 CAGGGGAAAAGCGCGTATTTTTAGTCATCCTGTTTACCTCTCTCTCAAAGAGTTTAGTCT 9792 Query 35429 CCAGGATTTCCGGGGCGGTTCA 35450 |||||||| ||||||||||||| Sbjct 9791 CCAGGATTCCCGGGGCGGTTCA 9770 Score = 500 bits (554), Expect = 3e-137 Identities = 428/527 (81%), Gaps = 11/527 (2%) Strand=Plus/Minus Query 34180 AACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGC 34239 ||||||||||||||||||| ||||| | |||||||| ||||| || |||||||||||| Sbjct 38555 AACTCAGGCTGCCAGATCACCGTTTACAATGGAAGCGTAATATGCCAGTTCTGCTTCTGC 38496 Query 34240 CGGAGGAGTATGGCCCAGCCTTCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGT 34299 || || |||| ||| ||||| |||||| || |||||||| |||||||||||||||| Sbjct 38495 TGGCGGGATATGCCCCGGCCTTTCCAGCAGCCGGCGATTGTTGTACCAGTCCACCCACG- 38437 Query 34300 TAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGC 34359 |||| |||||||| || ||||||||||| |||| |||||||| ||||| || Sbjct 38436 --------CCAGCTCCACTTCGGCGCGGTTTTTCCATTTCTTGCGGTGTATCACCTCTGC 38385 Query 34360 TTTGTAAAGACCATTGATGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCC 34419 ||| ||||| |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| Sbjct 38384 TTTATAAAGGCCATTGATACTCTCTGCCATTGCGTTGTCGTATGAGTCGCCTGTGCTCCC 38325 Query 34420 TGTTGATGCCAGTAATCCGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTG 34479 ||||||||||||| || || || || || || | ||| || ||||| ||||||||||| Sbjct 38324 -GTTGATGCCAGTAGCCCTGCGTCCTTAAGCCGTTGCGTGTACGCCAGCGACACATACTG 38266 Query 34480 AGAGCCTTTATCGCTGTGATGGATGGTGCCAGACGGACGACGGGCCCACAACGCCTGCTC 34539 ||||||||||| ||||||||| || || | ||| || |||||||||||||||||||| Sbjct 38265 CGAGCCTTTATCTGAGTGATGGATAGTTCCTGCCGGCCGTCGGGCCCACAACGCCTGCTC 38206 Query 34540 CAGCGCATCCAGCACGAATGTCGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTA 34599 | |||| ||||| ||||| ||||||||||| || || || ||||| || |||||||| Sbjct 38205 CGGCGCGTCCAGTACGAACGTCGTTTCCATCGATGACGACACCCG-CAGCCCACGATACG 38147 Query 34600 TCCGGCAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTA 34659 || || ||||| || ||||| ||||||||||| | ||||||||||| ||||||||||| Sbjct 38146 ACCCGCGAACACGTCGATGATGAACGCCACATAAGCAAAGCCCTGCCAGGTGCTGACGTA 38087 Query 34660 AGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACT 34706 || || || ||||||||||||||||| || ||| | ||||||||| Sbjct 38086 CGTGAAGTCTGCCACCCACAGCTGGTCTGGCCGTCCAACCACGAACT 38040 Score = 150 bits (166), Expect = 7e-32 Identities = 121/145 (83%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 34140 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGTAACTCAGGCTGCCAGATCAT 34199 ||||||||||||| ||||||||| ||| ||||| ||| | ||||||||||||||| || | Sbjct 36682 TGAACCGCCCCGGTTTTCCTGGATAGTATTTTAGCTGGG-AACTCAGGCTGCCAGCTCCT 36624 Query 34200 CGTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCC 34259 || ||||||||||||||||| || | ||| ||||||||||| || |||| ||||||| Sbjct 36623 TATTCCCGATGGAAGCATAATATGCCTGTTCGGCTTCTGCCGGTGGGATATGCCCCAGCC 36564 Query 34260 TTCCCAGCAATCGTCGATTGTTATA 34284 || |||||| || |||||||| || Sbjct 36563 TTTCCAGCAGCCGGCGATTGTTGTA 36539 >seq1277 Length=559 Score = 309 bits (342), Expect = 1e-79 Identities = 405/555 (73%), Gaps = 7/555 (1%) Strand=Plus/Minus Query 61597 AGGCAAGAAAATTACTGCGTTGGGGGCAACAAAACTTTACTACGGTGCAAATTTTGCACC 61656 |||| | ||| | |||| |||||||| || ||||| |||||||||||| |||| Sbjct 558 AGGCCCGGAAACTGCTGCACTGGGGGCAGCAGAACTTCGATACGGTGCAAATCCTGCATA 499 Query 61657 GTGGGAAAAAGGTCGGTACGGAACGCATCTGGTATGGCGATAAAGAAAATATCGCCCTGG 61716 | || ||||| || || || || || |||||||| |||||||| || | | |||| Sbjct 498 GCGGTAAAAAAGTGGGGACAGAGCGTATCTGGTACGGCGATAAGGAGCAGGTAAAACTGG 439 Query 61717 GAACGGAACAAGAGTTCTGGATGGTGCTACCGAAAGCCGAAATTCCACATATCAAAGCCA 61776 | || || || || |||||| ||| | |||||||| ||| | || | |||||||||| Sbjct 438 GCACCGACCAGGACTTCTGGCTGGCCTTGCCGAAAGCGGAAGTGCCGAACATCAAAGCCA 379 Query 61777 AATATACCCTTGATGGTAAAGAGCTCACCGCGCCAATTAGCGCCCATCAGCGGGTAGGGG 61836 |||| || ||| |||||||| ||||| ||| || ||||||||||| |||| Sbjct 378 AATACGTGCTGGATAAAAAAGAGCTGGAAGCGCCGATTGCTGCGCATCAGCGGGTCGGGG 319 Query 61837 AAATTGAACTTTACGACCGTGATAAACAGGTGGCGCACTGGCCGCTGGTTACCCTGGAAT 61896 | || | || || |||||||| || ||||||||||||||||||||| || |||||| Sbjct 318 AGATCCAGCTCTATGACCGTGACAAGGTGGTGGCGCACTGGCCGCTGGTGACGCTGGAAG 259 Query 61897 CTGTCGGGGAAGGCAGCATGTTTTCTCGCCTGAGTGATTATTTCCACCATAAGGCCTGAC 61956 | || | | ||| | |||| |||||| |||| |||||| ||||||| | | | || Sbjct 258 CCGTTGATAAGGGCGGACTGTTCTCTCGCATGAGCGATTATCTCCACCACACGCTTTAAC 199 Query 61957 CTTTCTTTTGCAGCAGACTGGCAGGAGTGCGAGTCTGCTCGCATAATCAACACTCATTCC 62016 | || || ||||||||||||| ||||||||||||| |||||| ||||||| | Sbjct 198 C--GCTGATG-GGCAGACTGGCAGGGTTGCGAGTCTGCTCACATAATAAACACTCCTCGT 142 Query 62017 TTG-TGGTTTTAATATTGCAAC--TATACTGTATATAAAAACAGTAATA-ATGGAGGCGT 62072 ||| | | || || | || | |||| |||||| | | ||||||||| |||||||| Sbjct 141 TTGCCGATAATAGTAATCCAGCCTTATAGTGTATAAATATACAGTAATAGATGGAGGCAG 82 Query 62073 CATGAACTACGAGATTAAGCAGGAAGATAAACGTACCGTTGCAGGTTTCCATCTCGTTGG 62132 |||| ||||| || |||||| || ||||||||| |||| ||||| ||| | || || Sbjct 81 CATGGACTACAGCATCAAGCAGCAACATAAACGTAAGATTGCCGGTTTTCATTTGGTCGG 22 Query 62133 CCCGTGGGAACAGAC 62147 ||||||||||| || Sbjct 21 ACCGTGGGAACAAAC 7 >seq434 Length=1284 Score = 156 bits (172), Expect = 2e-33 Identities = 95/101 (94%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 24181 AGAGCCTGTAACTGTTTTCCGTCCATAAATTAACCTTCATTTGATGCTGGATTGAACATA 24240 |||||||| ||||||||| ||||||||||||||||| ||||||| ||||||||||||| Sbjct 146 AGAGCCTGCAACTGTTTTTCGTCCATAAATTAACCTGTTTTTGATGTTGGATTGAACATA 87 Query 24241 TCAAAATCAGGCAATTACACAAATCTATGTACAGGCTCTTT 24281 ||||||||||||||||||||||||||||||||||||||||| Sbjct 86 TCAAAATCAGGCAATTACACAAATCTATGTACAGGCTCTTT 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198739648625116