Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 >seq2 Length=17806784 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || ||||| |||||||| | ||| || || || ||||| || |||| Sbjct 12207178 GCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207237 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| |||||||| || || | ||||| | ||||||||| || | ||| Sbjct 12207238 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207297 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || || | | ||| |||||| | ||| || Sbjct 12207298 AATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12207357 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | |||||||||||| || ||||| || || ||||| || |||||| Sbjct 12207358 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207406 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || ||||| |||||||| | ||| || || || ||||| || |||| Sbjct 12207634 GCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207693 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| |||||||| || || | ||||| | ||||||||| || | ||| Sbjct 12207694 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207753 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || || | | ||| |||||| | ||| || Sbjct 12207754 AATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12207813 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | |||||||||||| || ||||| || || ||||| || |||||| Sbjct 12207814 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207862 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || | ||| |||||||| | ||| || || || ||||| || |||| Sbjct 12209002 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12209061 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| |||||||| || || | ||||| | ||||||||| || | ||| Sbjct 12209062 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12209121 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || || | | ||| |||||||| ||| || Sbjct 12209122 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGAC 12209181 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||||||||| || || || || || ||||| |||||||||||| Sbjct 12209182 TTCAAGAGTAATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCATG 12209230 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || | ||| |||||||| | ||| || || || ||||| || |||| Sbjct 12207406 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207465 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| |||||||| || || | ||||| | ||||||||| || | ||| Sbjct 12207466 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207525 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || || | | ||| |||||| | ||| || Sbjct 12207526 AATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12207585 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | |||||||||||| || ||||| || || ||||| || |||||| Sbjct 12207586 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207634 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || | ||| |||||||| | ||| || || || ||||| || |||| Sbjct 12207862 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207921 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| |||||||| || || | ||||| | ||||||||| || | ||| Sbjct 12207922 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207981 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || || | | ||| |||||| | ||| || Sbjct 12207982 AATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12208041 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | |||||||||||| || ||||| || || ||||| || |||||| Sbjct 12208042 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208090 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || | ||| |||||||| | ||| || || || ||||| || |||| Sbjct 12208090 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208149 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| |||||||| || || | ||||| | ||||||||| || | ||| Sbjct 12208150 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12208209 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || || | | ||| |||||| | ||| || Sbjct 12208210 AATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12208269 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | |||||||||||| || ||||| || || ||||| || |||||| Sbjct 12208270 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208318 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || | ||| |||||||| | ||| || || || ||||| || |||| Sbjct 12208318 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208377 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| |||||||| || || | ||||| | ||||||||| || | ||| Sbjct 12208378 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12208437 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || || | | ||| |||||| | ||| || Sbjct 12208438 AATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12208497 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | |||||||||||| || ||||| || || ||||| || |||||| Sbjct 12208498 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208546 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || | ||| |||||||| | ||| || || || ||||| || |||| Sbjct 12208546 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208605 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| |||||||| || || | ||||| | ||||||||| || | ||| Sbjct 12208606 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12208665 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || || | | ||| |||||| | ||| || Sbjct 12208666 AATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12208725 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | |||||||||||| || ||||| || || ||||| || |||||| Sbjct 12208726 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208774 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || | ||| |||||||| | ||| || || || ||||| || |||| Sbjct 12208774 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208833 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| |||||||| || || | ||||| | ||||||||| || | ||| Sbjct 12208834 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12208893 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| || || || | | ||| |||||| | ||| || Sbjct 12208894 AATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12208953 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | |||||||||||| || ||||| || || ||||| || |||||| Sbjct 12208954 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12209002 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||| || || || || | || || ||||| ||||| || || | Sbjct 12206951 CCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAGAT 12207010 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| || | ||| || || |||| || | ||||||||| || | ||| Sbjct 12207011 AAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGA 12207070 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||| || || || || | | ||| |||||| | ||| || Sbjct 12207071 ATGCCTTCTTTATCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207130 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | |||||||||||| || ||||| || || ||||| || |||||| Sbjct 12207131 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207178 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||||||||| || ||||| |||| || | | |||| ||||||||||| ||| |||| Sbjct 3493375 TTCTTTTTGGATGTTATAGTCGGATAATGTTCTTCCATCTTCCAATTGTTTACCGGCAAA 3493316 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 ||| | ||| |||||||| | || | |||||||| || ||||| ||| | | Sbjct 3493315 AATGAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATT 3493256 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || || | ||| || |||| ||||| |||||||| || || ||||| || Sbjct 3493255 TTCAATAGTATCGGAAGCTTCAACTTCCAGTGTAATAGTTTTACCTGTCAATGTTTTGAC 3493196 Query 39708 GAAGATCTGCAT 39719 || || ||||| Sbjct 3493195 AAAAATTTGCAT 3493184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347359198125881