Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 122 9e-23 seq2 104 2e-17 >seq3 Length=17417032 Score = 122 bits (134), Expect = 9e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||||| ||||| ||||| || ||||| |||| || ||||| || || | ||||| Sbjct 7878542 TCGTCCCGCGAAATCAGTTCATTACTGAATGTCAGTCCAGGCATTAGTCCTCTCTTTTTC 7878483 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| |||||||| ||||||||||| ||||||| |||||||| || || || || Sbjct 7878482 AGCCAGAATATGGCAGCGAAACTGCCACTGAAGAAGATTCCCTCGACCGCAGCAAAGGCA 7878423 Query 133039 ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG-CGATCCAGCGCAGCGCCCATTCGGC 133097 | | ||||||| | ||||| || || | ||| |||||| || ||||| | || Sbjct 7878422 ATTACGCGCTCGGCAAACGTAGC-ACTCTCGTGGTTAATCCAGTTCAAAGCCCAATTAGC 7878364 Query 133098 CTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 |||| ||||| |||| |||||||||||||| || Sbjct 7878363 TTTTTTAGCTACGCAGGGCAGTGTTTCGATGGCGTTGAA 7878325 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| ||||||||||| || || || || ||||| || | ||| || Sbjct 7878189 GTAAGTGTCGATGAGTAGGGAATACATTTCGGAATGAACATTTTCCATCGCCACTTGGAA 7878130 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||| || ||||| || ||||| | ||| ||||| || ||| |||||||| ||||| Sbjct 7878129 GCCATAGAAGCATCGAGCCTCTGTGATCTGGACTTCCTGGCTGAAGCGCTCGACGAGATT 7878070 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 || || || || || ||| |||||||| || || || ||||| ||| ||||| Sbjct 7878069 CTCATTCACAATACCATCGGATGCGGCGAAGAAAGCAAGAACGTGGGAGATAAAATGCTT 7878010 Query 133347 CTCGTTGTCGTTCAAGCGCTCCCAGTCG 133374 ||| || ||||| || | | ||| ||| Sbjct 7878009 CTCTTTCTCGTTTAATTGTTGCCAATCG 7877982 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 133384 TTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTC 133443 ||||| || || |||||||| || ||||||||||| ||||| || ||||||||||| | Sbjct 7877875 TTGGAGAGATCGACCTCCTCTACCGTCCAAAACGATGCCTCCGCCTTTTTGTACATCTGC 7877816 Query 133444 CACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGC 133503 || || || | |||| || ||||| | |||||| || | || ||||| || || Sbjct 7877815 CAAATATCGGGCCATTGAATTGGAAAGACCACAAAACGTCCAGGATTTTCTTTTAAAAGA 7877756 Query 133504 GGCTCCGCTTGGGGGTCGAA 133523 |||||| |||||| || || Sbjct 7877755 GGCTCCAATTGGGGATCAAA 7877736 >seq2 Length=17806784 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||| || || | || ||||| || | Sbjct 12207177 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207118 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | || || | || ||||| || |||||| | ||||| Sbjct 12207117 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGATAAAGAAGGCATTCCCCCAGACCAG 12207058 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| || || || || | || || | |||||||| Sbjct 12207057 CAGCGTCTGATCTTTGCTGGCAAGCAACTCGAGGATGGACGTACTTTATCTGACTACAAT 12206998 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | ||||| || || ||||| ||||||||||| || Sbjct 12206997 ATCCAAAAGGAGTCTACGCTTCACTTAGTGCTTCGTTTGAGAGGTGG 12206951 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| | || |||||||||||||| | || || || || | Sbjct 3492068 AATGCAAATTTTTGTTAAAACCTTAACTGGCAAAACCATCACGTTGGAAGTTGAAGCTTC 3492127 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | ||| |||||| || |||| |||||||| |||||||| | || || Sbjct 3492128 TGATACTATTGAAAATGTTAAAGCGAAGATCCAAGACAAAGAAGGAATTCCACCAGATCA 3492187 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398 ||| || ||||||| || || ||||| |||| || Sbjct 3492188 ACAACGTCTCATTTTTGCCGGTAAACAATTGGAAGA 3492223 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| | || || ||||| || || | || || || || | Sbjct 3493183 AATGCAAATTTTTGTCAAAACATTGACAGGTAAAACTATTACACTGGAAGTTGAAGCTTC 3493242 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | ||| | |||| ||||| | || ||||| |||||||| | || || Sbjct 3493243 CGATACTATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 3493302 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| || || ||||| |||| || | | || | |||||| || Sbjct 3493303 GCAACGTCTCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAACATTATCCGACTATAA 3493362 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||| | ||||| ||| | || || || Sbjct 3493363 CATCCAAAAAGAATCAACGCTCCATCTTGTTCTTCG 3493398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500157438442880