Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq22 113 3e-19 seq16 113 3e-19 seq12 100 2e-15 seq6 93.3 3e-13 seq35 89.7 4e-12 seq3 89.7 4e-12 >seq22 Length=4749808 Score = 113 bits (124), Expect = 3e-19 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 870794 AAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTA 870853 ||| | ||||| |||| ||| |||||| |||| ||||| |||||| |||| |||||| Sbjct 1647899 AAAGTCATTGTTGATTTTTCAAGTCCAAACGTTGCAAAAGAGATGCATGTTGGTCATTTA 1647958 Query 870854 AGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTT 870913 | || || |||||||| || || ||||| || ||||| | | || ||| | ||| Sbjct 1647959 CGTTCCACCATTATTGGAGATAGCATCTGTAGACTACTAGAATTTTTAGGTCACAACGTT 1648018 Query 870914 TATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 870970 | | | |||||| | |||||||||||||| ||||| || |||||||| ||| || Sbjct 1648019 TTAAGGTTGAATCATATTGGTGATTGGGGAACACAATTTGGAATGTTAATCGCTCAT 1648075 >seq16 Length=6357092 Score = 113 bits (124), Expect = 3e-19 Identities = 123/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 668847 GATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGT 668906 |||||| |||||| || || |||||| | || || | ||||| |||||||||||| | | Sbjct 160504 GATTAAAAGGTAAGGAGGGCCGTATTCGTGGCAACCTTATGGGCAAACGTGTCGATTTTT 160445 Query 668907 CTGCACGTACAGTTATTACTTCTGATCCCAATATTGC-TCTCAATGAAGTTGGTGTTCCT 668965 | || || || || ||||| ||||||| ||| |||| | | |||||||||| ||| Sbjct 160444 CGGCGCGCACTGTCATTACACCTGATCCAAAT-TTGCGAATTGACCAAGTTGGTGTACCT 160386 Query 668966 CTTATTATTGCTAAAAATCTTACTTTTGACGAAATTGTAAC 669006 | || ||||||| ||||| | |||||| ||||||||||| Sbjct 160385 CGTAGTATTGCTCAAAATTTAACTTTTCCTGAAATTGTAAC 160345 >seq12 Length=9021569 Score = 100 bits (110), Expect = 2e-15 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 ||||||||||||| | ||||| |||||| |||||| ||| || ||||| || | || Sbjct 2879908 CAAAAATAGTATTACTGGGATTCATTGCAACTTGATTTTTCGCAGCATCGCCCACAAGTC 2879967 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||| || || || || | ||||| ||| ||||| | ||| ||||||| ||||| || Sbjct 2879968 TTTCCGTATCGGTGAAAGCGACATAACTTGGTGTTGTTCTATTCCCTTGATTATTCGTAA 2880027 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACA 518677 |||| || || || |||||||| | || || ||| Sbjct 2880028 TAATCTCCACCTTCCCATTTTGAAAAACGCCGACA 2880062 >seq6 Length=12171684 Score = 93.3 bits (102), Expect = 3e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || || |||||||| ||||| || || |||||||| | | ||||||| | |||||| ||| Sbjct 8582533 CCATAAGCAAGAGCAGCTGCTGTAGGCTCATTAATAACTCTAAGAACGTTTAAACCAGCA 8582474 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 |||| ||| || || || || ||||| | |||||||| ||||||||||| || Sbjct 8582473 ATTTGGCCAGCGTCCTTTGTAGCCTGCCTCTGAGAATCATTAAAGTATGCTGGTACCGTG 8582414 Query 322364 ATAACTGCTTTATT 322377 | |||||| || || Sbjct 8582413 ACAACTGCATTCTT 8582400 >seq35 Length=1582057 Score = 89.7 bits (98), Expect = 4e-12 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 518500 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATA 518559 ||| || || | || ||||| || || | || || || || || || || |||||| Sbjct 784942 TCTGCCGATGAGTCTCTTTGCGTCGAACACTGTGTTCGTGGGGTTCATGGCGACTTGATT 785001 Query 518560 TTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 518619 |||||| ||||| |||| |||||||| || || ||||| | ||| || || || || Sbjct 785002 TTTGGCAGCATCGCCAAGGAGATGTTCCGTATCCGTAAAGGCAACGTAGCTGGGTGTCGT 785061 Query 518620 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 | || || ||||| || || | || || ||||| || | ||||| || || || || Sbjct 785062 TCTGTTTCCCTGATCGTTGGCGACGATCTCCACTTTGCCCTGCTGCCAAACTCCCACGCA 785121 Query 518680 ACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 |||| || || || ||||||||||| ||| Sbjct 785122 GGAGTAAGTCGTGCCCAAGTCAATACCAATTGCA 785155 >seq3 Length=17417032 Score = 89.7 bits (98), Expect = 4e-12 Identities = 89/112 (79%), Gaps = 4/112 (4%) Strand=Plus/Plus Query 367000 GCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTAT 367059 ||||| || || ||||| ||||| || ||||||| |||||||| ||||||||||| Sbjct 15308938 GCCACTATTGCTTTTGGAATGGGAATAGATAAACCTAATGTTAGATTTGTTATTCATGCC 15308997 Query 367060 GGAGCTCCCAAGAAT--ATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGG 367109 | || |||| ||| || ||||||||||||||||||| ||||||||| || Sbjct 15308998 ATA-CTTCCAA-AATCAATCGAAGGTTATTATCAAGAAAGTGGTAGAGCTGG 15309047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780700475566642