Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4 251 9e-62 seq12 233 2e-56 seq516 143 3e-29 seq35 118 1e-21 seq7 102 1e-16 >seq4 Length=16106798 Score = 251 bits (278), Expect = 9e-62 Identities = 605/908 (67%), Gaps = 12/908 (1%) Strand=Plus/Minus Query 6896 GGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCA 6955 ||||| || || |||||| |||| | ||||| | ||| || |||||||| ||| Sbjct 4723164 GGAATGGTGGTGTTTCTCTTGATAAGAGCTGTCATGACACCTCCAGCAGTTTCGATACCA 4723105 Query 6956 AGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCC 7015 ||||| || ||||| ||||| | ||| || || || || || ||| | ||||| Sbjct 4723104 AGAGAGAGGGGTGTAACGTCAAGGAGCAAAAGATCCTGGACCTCCTCGGACTTGTCACCG 4723045 Query 7016 GTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTT 7075 ||| ||||| |||||||| | || ||||| || || ||||| || |||||||| | Sbjct 4723044 TGTAAAATGGCAGCTTGGACAGCAGCTCCGTAAGCTACAGCCTCGTCAGGGTTAATGGAC 4722985 Query 7076 TTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGT 7135 || || ||||| || || || || | ||| | | | ||| ||||| || || ||| Sbjct 4722984 TTGTTGAGTTCCTTGCCATTGAAGAAGTCCTGGAGGAGCTTTTGGATTTTGGGAATACGT 4722925 Query 7136 GTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGA 7195 |||||||| || || | ||||| || | | | || || || || || | ||| ||| Sbjct 4722924 GTCGATCCGCCAACAAGGACGATGTCGTGAATGTGCGCCTTGTCCATTTTGGCGTCGCGA 4722865 Query 7196 AGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAA 7255 |||| || || ||||| || | | | ||| | ||| ||||| ||||| || Sbjct 4722864 AGTGACTTCTCCACAGGCTCGAGAGTGCCTCTGAAGAGGTCGGCGCACAGCTCCTCGAAG 4722805 Query 7256 CGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 || || | ||||||||| |||||||| || | || ||||| | ||||| || || ||| Sbjct 4722804 CGGGCCCTGGTAATGGACGTATAGAAGTCGATTCCTTCGTAAAGGGAATCGATCTCGATG 4722745 Query 7316 GTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGA 7375 | | || | || || || | || ||||| || ||||| || ||| || |||||| Sbjct 4722744 CTCGCCTGGGTCGAGGAGGAGAGGGTGCGCTTGGCACGCTCGCAGCTCGTGCGCAAACGA 4722685 Query 7376 CGAAGGGCACGCGGGTT--ACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAG 7433 || ||||| ||| || || | | || || || | ||| || || || || | | Sbjct 4722684 CGCAGGGCGCGCTTATTCGACAG--CAGGTCCTTTTTGTATTTGCGCTTGAATTCCTGAA 4722627 Query 7434 AGAAGT-GTCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCG 7490 ||||| || || | | | | || || || || ||||| | || || || || | Sbjct 4722626 CGAAGTGGTTGACCATGCGATT---GTCAAAGTCCTCGCCACCAAGATGCGTGTCACCGG 4722570 Query 7491 CGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTAC 7550 | |||| || ||||| |||||||| | || ||| | | | || || || || |||| Sbjct 4722569 CCGTCGACTTCACTTCGAAGATACCGTCCTCGATGGTGAGGATGGAGACGTCGAAGGTAC 4722510 Query 7551 CACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGT 7610 |||| ||||| || || || || ||||| || | | ||||| |||||||||| Sbjct 4722509 CACCGCCCAGATCGAAGATAAGGACGTTGCGCTCACCCACGGCCTTCTTGTCGAGACCGT 4722450 Query 7611 ACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATA 7669 | ||||| || || || || ||||| || || || || || ||| || | || | || Sbjct 4722449 AGGCGATGGCTGCGGCGGTGGGTTCGTTGATGATTCGCAGCACA-TTTAAACCCGAGATG 4722391 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 || | || || || || || || || ||||| ||||| ||||| || || || || | Sbjct 4722390 GTACCGGCGTCCTTGGTTGCCTGACGCTGCGAGTCGTTGAAGTAAGCGGGTACGGTGATC 4722331 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || || | ||||| ||| || || || | || || | || ||||| || | | Sbjct 4722330 ACGGCATTGGTGACGGTCTGGCCAAGGTAGGCCTCGGCCGTCTCCTTCATCTTTACCAAA 4722271 Query 7790 ACCATCGA 7797 |||||||| Sbjct 4722270 ACCATCGA 4722263 Score = 190 bits (210), Expect = 3e-43 Identities = 257/356 (72%), Gaps = 9/356 (3%) Strand=Plus/Plus Query 7448 AGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCA 7507 || ||||| ||||| || || ||||||||||| || || ||||||||||| || || || Sbjct 10639233 AGCCTCGAGTCGAAGTCCTCGCCACCCAAGTGGGTGTCGCCCGCGGTCGCCTTCACCTCG 10639292 Query 7508 AAGATA---CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCA 7564 |||| || | || ||| | | | || || || || || || || |||||||| Sbjct 10639293 AAGAGCGAGCCCTCGTCGATGGTGAGGATGGAGACGTCGAAGGTGCCGCCGCCCAGGTCG 10639352 Query 7565 AAAATGAGTACGTTCGTATCGTCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCC 7621 || || || |||||| | || | |||| ||||||||||| ||||| || | ||| Sbjct 10639353 AAGATCAGCACGTTCTTCTCCCC---TTTGAGATTCTTATCGAGGCCGTAGGCCAGGGCC 10639409 Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 || || || || || || || || || || ||| ||||| || || | ||||| Sbjct 10639410 GCGGCAGTGGGCTCGTTGATTATGCGGAGTACGTTGAGGCCGGCTATTACACCGGCATCC 10639469 Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTG 7741 || ||||| || || ||||| ||||| ||||||||||| ||||||| ||||||||| | Sbjct 10639470 TTGGTCGCCTGGCGCTGCGAGTCGTTGAAGTAGGCCGGCACCGTTATCACCGCGTCCTTC 10639529 Query 7742 ACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 || |||| || || |||| |||||||| || |||||||| | || |||||||| Sbjct 10639530 ACCTTCTGTCCCAGGTACGCCTCCGCGATTTCCTTCATTTTTATCAGCACCATCGA 10639585 Score = 111 bits (122), Expect = 2e-19 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 || |||||||||| || | ||| || ||||| ||||| || || ||||| || | Sbjct 10640102 ACCTTCTTCCGATGAGCCTCTTCGCGTCAAACACTGTATTGGATGGATTCATCGCCACCT 10640161 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 | || ||||| || || || || || || || ||| ||||||| || ||||| | Sbjct 10640162 GATTTTTCGCGGCATCGCCTATCAGTCGCTCGGTAT---CCGTAAAGGCAACGTAACTAG 10640218 Query 8049 GGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 | ||||| ||||| || || ||||| || || || ||||| | | |||||| |||| Sbjct 10640219 GTGTCGTCCGATTACCCTGATCGTTGGCGATGATCTCTACCTTCCCCTGTTGCCAAACGC 10640278 Query 8109 CGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | ||||| || ||||| || || | |||||||||||||| Sbjct 10640279 CTACGCAGGAGTACGTAGTACCGAGGTCAATACCGATTGC 10640318 >seq12 Length=9021569 Score = 233 bits (258), Expect = 2e-56 Identities = 733/1127 (65%), Gaps = 10/1127 (1%) Strand=Plus/Plus Query 6572 TCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAAT 6631 |||| || ||| ||| | ||||| || | |||| ||||||||| || || |||| Sbjct 2878196 TCTTTATTTTTGTACGTCTCCGCCTCGTTTACCACTCGTTCAATGTCCTCCTTGGATAGA 2878255 Query 6632 CTCCCCTTATCATTCGTAATCGTAATCTTT-TCGGATTTACCCGAGGCCTTATCTTCAGC 6690 | || || ||||| |||| || || ||| | ||| |||| | |||||| | || Sbjct 2878256 CGGCCTTTGTCATTTCTAATTGTTATTTTTGTTCTCTTTGCCCGTAGACTTATCAGCCGC 2878315 Query 6691 ACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACC 6750 |||||| || || ||||| | || | |||||| | || | || || || ||| Sbjct 2878316 TGATACATTTAAGATGCCATTGGTGTCGATGTCGAACGTCACCTCGATCTGGGGCACACC 2878375 Query 6751 CCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGC 6810 | || || | | || ||||| || || ||| |||| | | | ||||||| ||| Sbjct 2878376 ACGTGGAGCTGAAGAGATTCCCGTCAACTCGAATTTACCTAAGAGATTGTTATCTTTCGT 2878435 Query 6811 CTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGT 6870 | | | |||||| || ||||||| || ||| ||| |||||||| ||| Sbjct 2878436 CATGGCTCTTTCACCCTCGTAGACTTGGATCAACACTCTAGGCTGATTATCCGCGTACGT 2878495 Query 6871 TGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCAT 6930 | || || || || ||| | |||||| || ||||||||| || | | ||||| Sbjct 2878496 AGTAAAAATCTGCGTTTGCTTCGTTGGAATGGTAGTATTTCTCTTGATGAGGGTAGTCAT 2878555 Query 6931 AATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTC 6990 | || || ||||||| || | |||| ||||| || || | ||| | || || Sbjct 2878556 GACTCCGCCAGCGGTTTCGATACCCAATGACAATGGTGTGACATCGAGGAGAAGCAAATC 2878615 Query 6991 TTGAACAGATTCGTTCCCTTCACC--CGTT-AAGATGGCGGCTTGGACCGTCGCCCCGTA 7047 |||||| |||| || | | ||| || || || || || || | || || || Sbjct 2878616 TTGAACC---TCGTCTGATTTATCTCCGTGCAAAATCGCTGCCTGCACGGCTGCTCCATA 2878672 Query 7048 TGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGA 7107 || || |||||||| || ||||| | || |||| ||| || |||||||| | || Sbjct 2878673 AGCAACGGCCTCATCTGGATTAATGGACTTGTTCAATTCCTTGCCGTTAAAGAAGTCTTG 2878732 Query 7108 TAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCAC 7167 || || | || |||||||||||||| |||||||| || || | |||||| || | Sbjct 2878733 TAGCAGCTTCTGGATTTTCGGGATTCGCGTCGATCCGCCAACGAGAACGATACTGTTAAT 2878792 Query 7168 TTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACG 7227 || ||| || ||||| | || || | || || || || || || | | | Sbjct 2878793 TTGGCCTTTGTCCATCTTGGCATCGCGCAATGACTTCTCAACGGGATCGAGCGTGCTCCT 2878852 Query 7228 GAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATG-TATAGAAATCAA 7286 || | ||| || || ||||| || | || || || || || | | || || |||| Sbjct 2878853 AAAGAGGTCGGAGCAAAGCTCCTCGAATCTAGCTCGCGTTATCGACGATGTAAAAGTCAA 2878912 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCT 7346 || ||| | | ||| || || || ||| | | ||| | || ||| | ||||||| Sbjct 2878913 TTCCTTCGAAAAGCGATTCGATCTCGATGCTCGCTTGCGTCGACGAGCTGAGAGTTCGCT 2878972 Query 7347 TTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTT 7406 | || ||||| || | ||||| | ||| | | || ||| || ||||| || || | Sbjct 2878973 TGGCTCGCTCGCATGATGTTCGGAGACGTCTCACTGCTCGCTTATTGCCGGACATGTCCT 2879032 Query 7407 TCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTT 7466 |||||| ||| || | ||||||| ||||| | | | |||||||||| Sbjct 2879033 TCTTATATTTGCGAGTGAACTCTTGGATAAAGTGATTCACCATGCGATTGTCGAAATCTT 2879092 Query 7467 CACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGT 7526 |||| |||||||| || ||||| || | | ||||| || || || || || || Sbjct 2879093 CACCGCCCAAGTGCGTGTCCCCGGCAATGGACTTGACCTCGAAAATTCCGTTGTCGATCG 2879152 Query 7527 TTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT 7586 ||| | || || || || || || || || || || ||||| | || |||| | ||| Sbjct 2879153 TTAGGACGGATACGTCGAAGGTGCCGCCGCCAAGATCGAAAATCAATATGTTCTTTTCGC 2879212 Query 7587 CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646 | | | || || || || || || || || || |||||||| | ||||||||| || Sbjct 2879213 CAGATGTCTTTTTGTCAAGGCCATAGGCAATGGCAGCCGCCGTCGATTCATTAATGATGG 2879272 Query 7647 G-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 | || ||| |||| |||| || ||| | || |||||||||||||| Sbjct 2879273 GCAATACA-TTCAAACCAGACATCGTTCCAGCGTCTTTCGTCGCTTG 2879318 >seq516 Length=1145 Score = 143 bits (158), Expect = 3e-29 Identities = 183/251 (73%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 22444 TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAATGAA 22503 || || |||||||| || || ||||| |||||| || | |||| ||||| || ||| Sbjct 842 TTCTACCAGGCATCCACCTCTGAGCTGTACGGTCTGGTGCAGGAAATCCCACAGAAAGAA 901 Query 22504 AATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGATGGGATATTGGGCG 22563 | || ||||| |||||||| || || |||| |||||| ||| || | || ||| Sbjct 902 ACCACTCCGTTCTACCCGCGCTCTCCGTATGCGGTAGCAAAACTGTACGCCTACTGGATC 961 Query 22564 ACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCAC 22623 || || || || | ||||| ||||| |||| || || || || || ||||||||||| Sbjct 962 ACCGTGAACTACCGTGAATCCTACGGCATGTACGCCTGTAACGGCATCCTGTTCAACCAC 1021 Query 22624 GAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAAT 22683 ||||| ||| | || || |||| ||||||||| || ||||| || | || | |||| || Sbjct 1022 GAATCTCCGCGTCGCGGCGAAACCTTCGTGACCCGCAAAATCACCCGCGCTATCGCCAAC 1081 Query 22684 ATCAGTGCAGG 22694 ||| | ||||| Sbjct 1082 ATC-GCGCAGG 1091 >seq35 Length=1582057 Score = 118 bits (130), Expect = 1e-21 Identities = 175/244 (72%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 ||||||| ||||| || | |||||| || || |||||||| ||||||||||||| || Sbjct 784938 ACTTTCTGCCGATGAGTCTCTTTGCGTCGAACACTGTGTTCGTGGGGTTCATGGCGACTT 784997 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 | || || || || || || | ||| |||| || |||||||| || ||||| | || Sbjct 784998 GATTTTTGGCAGCATCGCCAAGGAGATGTTCCGTA---TCCGTAAAGGCAACGTA-GCTG 785053 Query 8049 GG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || ||||||| || || || ||||| || | || || || | | | ||||| || Sbjct 785054 GGTGTCGTTCTGTTTCCCTGATCGTTGGCGACGATCTCCACTTTGCCCTGCTGCCAAACT 785113 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATTTTATATATT 8167 || ||||| || || || || || || |||||||| ||||| || ||| || |||| Sbjct 785114 CCCACGCAGGAGTAAGTCGTGCCCAAGTCAATACCAATTGC---AGGCATGTTGATTATT 785170 Query 8168 TTGT 8171 |||| Sbjct 785171 TTGT 785174 >seq7 Length=10955212 Score = 102 bits (112), Expect = 1e-16 Identities = 87/106 (82%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 22431 AAAAACGTGT-AAATTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAA 22489 |||||| || ||||||||||| || ||||| || || || || |||||||| || ||| Sbjct 3146551 AAAAACCCGTCAAATTTTATCAAGCTTCTACCTCCGAACTTTATGGTAAAGTTAAAGAAG 3146610 Query 22490 CTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGG 22535 |||||||||||||||||||| |||||||| ||||| || ||||| Sbjct 3146611 TACCACAAAATGAAAATACACCATTTTACCCACGTTCTCCTTATGG 3146656 Score = 82.4 bits (90), Expect = 1e-10 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 22570 AATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCACGAATCA 22629 |||||||||||| | ||| ||||||||| || ||||||||| | |||||||||||| Sbjct 3146787 AATTATAGAGAAGCGTACAATATGTTTGCTTGTAATGGTATACTTTTCAACCACGAAAGC 3146846 Query 22630 CCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAAC 22667 || | || |||||||| || ||||| || || || || Sbjct 3146847 CCACGGCGTGGTGAAAATTTTGTGACTCGTAAGATTAC 3146884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635113293483880