Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 176 1e-38 seq34 132 1e-25 >seq2 Length=17806784 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||| ||| | |||||||| ||||| || || |||||||| |||| ||||| Sbjct 12207412 TCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGT 12207471 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || | |||||||| ||||| || || || || ||||| || |||||||| Sbjct 12207472 ACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCC 12207531 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| ||||| || |||||| || || || ||||||||| ||| |||||||| Sbjct 12207532 TTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAG 12207591 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| || || || ||||| | |||||| Sbjct 12207592 AGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207633 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||| ||| | |||||||| ||||| || || |||||||| |||| ||||| Sbjct 12207868 TCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGT 12207927 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || | |||||||| ||||| || || || || ||||| || |||||||| Sbjct 12207928 ACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCC 12207987 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| ||||| || |||||| || || || ||||||||| ||| |||||||| Sbjct 12207988 TTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAG 12208047 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| || || || ||||| | |||||| Sbjct 12208048 AGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208089 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||| ||| | |||||||| ||||| || || |||||||| |||| ||||| Sbjct 12208096 TCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGT 12208155 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || | |||||||| ||||| || || || || ||||| || |||||||| Sbjct 12208156 ACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCC 12208215 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| ||||| || |||||| || || || ||||||||| ||| |||||||| Sbjct 12208216 TTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAG 12208275 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| || || || ||||| | |||||| Sbjct 12208276 AGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208317 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||| ||| | |||||||| ||||| || || |||||||| |||| ||||| Sbjct 12208324 TCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGT 12208383 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || | |||||||| ||||| || || || || ||||| || |||||||| Sbjct 12208384 ACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCC 12208443 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| ||||| || |||||| || || || ||||||||| ||| |||||||| Sbjct 12208444 TTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAG 12208503 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| || || || ||||| | |||||| Sbjct 12208504 AGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208545 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||| ||| | |||||||| ||||| || || |||||||| |||| ||||| Sbjct 12208552 TCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGT 12208611 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || | |||||||| ||||| || || || || ||||| || |||||||| Sbjct 12208612 ACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCC 12208671 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| ||||| || |||||| || || || ||||||||| ||| |||||||| Sbjct 12208672 TTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAG 12208731 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| || || || ||||| | |||||| Sbjct 12208732 AGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208773 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||| ||| | |||||||| ||||| || || |||||||| |||| ||||| Sbjct 12208780 TCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGT 12208839 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || | |||||||| ||||| || || || || ||||| || |||||||| Sbjct 12208840 ACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCC 12208899 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| ||||| || |||||| || || || ||||||||| ||| |||||||| Sbjct 12208900 TTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAG 12208959 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| || || || ||||| | |||||| Sbjct 12208960 AGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12209001 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| || ||| | |||||||| ||||| || || |||||||| |||| ||||| Sbjct 12207184 TCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGT 12207243 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || | |||||||| ||||| || || || || ||||| || |||||||| Sbjct 12207244 ACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCC 12207303 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| ||||| || |||||| || || || ||||||||| ||| |||||||| Sbjct 12207304 TTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAG 12207363 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| || || || ||||| | |||||| Sbjct 12207364 AGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207405 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| || ||| | |||||||| ||||| || || |||||||| |||| ||||| Sbjct 12207640 TCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGT 12207699 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || | |||||||| ||||| || || || || ||||| || |||||||| Sbjct 12207700 ACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCC 12207759 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| ||||| || |||||| || || || ||||||||| ||| |||||||| Sbjct 12207760 TTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAG 12207819 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| || || || ||||| | |||||| Sbjct 12207820 AGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207861 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||| ||| | |||||||| ||||| || || |||||||| |||| ||||| Sbjct 12209008 TCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGT 12209067 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || | |||||||| ||||| || || || || ||||| || |||||||| Sbjct 12209068 ACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCC 12209127 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| || || || |||||| || || || ||||| ||| ||| |||||||| Sbjct 12209128 TTCTTTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACTTCAAG 12209187 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || ||||| || ||||| || | ||||| Sbjct 12209188 AGTAATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 12209229 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| ||||| |||||||| || | | ||| | ||||| ||||| || Sbjct 12206974 GTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAGATAAAGTACGTCCATCCTCGAGTTG 12207033 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || || |||||||| |||||||||||||| || ||||| || Sbjct 12207034 CTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCTTTATCCTGAATCTT 12207093 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || || ||||||||| ||| |||||||| |||| || || ||||| Sbjct 12207094 AGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGT 12207153 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | |||||| Sbjct 12207154 TAATGTCTTAACGAAAATTTGCAT 12207177 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || | || || || ||||||||||||||||| | ||| ||||| |||||||| Sbjct 3492050 AACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTC 3491991 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || ||||| || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 3491990 TAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTG 3491931 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| || || |||||||||||||| || || || ||||| |||| || || Sbjct 3491930 GATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTT 3491871 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| ||||| | ||||| Sbjct 3491870 ACCAGTCAAGGTTTTAACGAAAATCTGCAT 3491841 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || | || || || ||||||||||||||||| | ||| ||||| |||||||| Sbjct 3493165 AACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTC 3493106 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || ||||| || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 3493105 TAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTG 3493046 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| || || |||||||||||||| || || || ||||| |||| || || Sbjct 3493045 GATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTT 3492986 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| ||||| | ||||| Sbjct 3492985 ACCAGTCAAGGTTTTAACGAAAATCTGCAT 3492956 Score = 147 bits (162), Expect = 5e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || || || || |||||||| || || || |||| | ||||| |||||||| Sbjct 3493393 AACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGATAATGTTCTTCCATCTTC 3493334 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || ||||| || || || || ||||| || ||||| ||||| |||||||| ||||| Sbjct 3493333 CAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 3493274 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || || || ||||| || || ||| ||| ||||| || |||| || || Sbjct 3493273 AATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCCAGTGTAATAGTTTT 3493214 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||||| ||||| || || | ||||||| Sbjct 3493213 ACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183 Score = 104 bits (114), Expect = 5e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 194977 GTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATG 195036 ||||| |||||||| | || ||||| || || || || |||||||| ||||| ||||| Sbjct 3492232 GTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATT 3492173 Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||||||||| || || || || || ||||| || || ||| ||| ||||| Sbjct 3492172 CCTTCTTTGTCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCC 3492113 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || | || || || || || ||||| || || | ||||||| Sbjct 3492112 AACGTGATGGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCATT 3492068 >seq34 Length=1613596 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||||||||| || || | | ||| | || ||||| || || || || || || | Sbjct 772942 CTTTTTGAATATTATAGTCAGATAAAGTACGACCGTCTTCAAGTTGTTTTCCAGCAAAAA 773001 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | | || |||||| |||||||| ||||||||||| ||||| || || || || || | Sbjct 773002 TTAATCTTTGTTGATCTGGAGGGATGCCTTCTTTATCTTGTATCTTAGCTTTCACATTTT 773061 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 |||| || || || ||| ||||| ||||||| ||||| ||||| |||||||| |||| Sbjct 773062 CAATCGTATCTGATGCTTCTACTTCTAGGGTAATAGTCTTCCCTGTTAAAGTTTTAACGA 773121 Query 195131 ACACTTGCATT 195141 | | ||||||| Sbjct 773122 AGATTTGCATT 773132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109446673172519