Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq13 109 7e-19 >seq13 Length=8037603 Score = 109 bits (120), Expect = 7e-19 Identities = 125/163 (77%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 104921 GGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGATTTCA- 104979 ||||| ||| | ||| ||| |||| || | |||||| | || || | ||| ||||| Sbjct 7607484 GGTGTCAAAATTTGGGATGCCAATGCATCTAGAAAGTTTCTCGACTCAT-TGGGTTTCAT 7607542 Query 104980 CTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCTGGAGC 105039 | | || | ||||| |||||||| || |||||||| ||||||||||||||| ||| || Sbjct 7607543 CGATAGAGACGAAGGAGATTTAGGCCCGATTTATGGCTTTCAATGGAGACATTATGGTGC 7607602 Query 105040 TCAATATATCGAC-TGTGATACCGACTATACCGGCCAAGGTAT 105081 |||| |||||| ||| |||| || ||||| ||||||||||| Sbjct 7607603 AAAATACATCGACATGT-ATACAGATTATACAGGCCAAGGTAT 7607644 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 104867 GAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAACTTGTTAAATGAAATTGGTGTT 104926 |||||| | ||| | || | ||||| ||||||| | || ||| ||||| | ||| Sbjct 7580803 GAATTACTTTGGTTCATTAGAGGTTCAACAAATGCAAAAGAATTATCTGAAAAAGATGTA 7580744 Query 104927 AAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGATTTCACTTTCGA 104986 | | ||| ||| |||| |||||||| | ||||| |||| ||| ||| | |||| Sbjct 7580743 CACATTTGGGATGCTAATAGTTCACGTGAATTTTTGGATTTATGTAAATTCACCGATCGA 7580684 Query 104987 AAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCTGGAGCTCAATAT 105046 |||| || |||||||| || | ||||| |||||||||||||| |||||| ||||| Sbjct 7580683 GAAGAGGGAGATTTAGGCCCTGTGTATGGCTTTCAATGGAGACACTTTGGAGCAAAATAT 7580624 Query 105047 AT 105048 || Sbjct 7580623 AT 7580622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658382978791720