Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8 167 3e-36 >seq8 Length=10932247 Score = 167 bits (184), Expect = 3e-36 Identities = 220/305 (72%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 48277 TATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 |||| | || || |||||||| || | ||||||||||||||| ||||| ||||| || | Sbjct 3798651 TATTTTTCTTTAGATCAAGAAATTCAAATATATCAGCATGCCACGGTTCCAAATACATGG 3798592 Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396 | | | | || |||| ||||| || |||||||| | ||||| || ||||| ||||||| Sbjct 3798591 CAAATGCCCCAGGTCTCTTATTTCCACCTTGATCAACATATCGCGCTGTATTATTATAAA 3798532 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 |||||| ||| || || | ||||| ||||| ||||| || || | || | | || Sbjct 3798531 CTCTTATCATAGGAACTAAGCCATTCGATATTCCATTTGTGCCAGCGATTCTAGTACCTT 3798472 Query 48457 TAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCAC 48516 | ||||| ||| || || | ||| || |||||||| |||| | || |||| Sbjct 3798471 TTGCTCTAATAGTATGAACACTCAAACCAATGCCACCTGCAGATTTACTAACTAATGCAC 3798412 Query 48517 ACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAAC 48576 | | ||| | ||||||||||||||||| || ||||| || |||| ||| || || | Sbjct 3798411 ATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGTTAGAAGGAAGC 3798352 Query 48577 AACTA 48581 ||||| Sbjct 3798351 AACTA 3798347 Score = 152 bits (168), Expect = 6e-32 Identities = 200/281 (71%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 47253 ataattttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGA 47312 ||||||| ||||| | ||| | ||||| |||| ||| || || |||||| | | Sbjct 3800453 ATAATTTCATTTTTCATTTCTTCATCCCAAATATTTCTTTCGGTCAAATCTTTTAATAAA 3800394 Query 47313 TGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTA 47372 ||||||||||||| ||||||||||| || || || | | |||| |||||||| || Sbjct 3800393 TGAGGATTAACAACCTGAAATTCTCCCGAAAGAACGCGTCTTGTATAGATATTACTCGTG 3800334 Query 47373 TATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGAT 47432 || ||||| |||||||||||||| |||| |||||||| || || ||||| ||||| | Sbjct 3800333 TAAGGTTCGATAGATTCATTATTCCCAAGTATTTGAGCTGTAGAAGCTGTTGGCATTGGA 3800274 Query 47433 GCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAA 47492 |||| |||||| || | | |||| |||| ||| | ||||| Sbjct 3800273 GCAAGTAATAATGAGTTACGGATACCATCTTTTGCTATTTTATCTTTTAAAGCACTCCAA 3800214 Query 47493 TCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTG 47533 | ||||||||||| ||||| |||||||| | ||| ||||| Sbjct 3800213 TTCCAAAGATCTGTTGGAATTACATTCCACATATCGTATTG 3800173 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 47825 AATTTCTCTTAATTTATTAAAATCAAAC---TTGTTATTTA---TAACAAACCTATTAAG 47878 || |||| | ||||| | ||| ||| || || ||||| | |||||||| |||||| Sbjct 3799490 AACTTCTTTCAATTTTTGAAAGTCATACGTTTTTTTATTGACATTAACAAACATATTAAC 3799431 Query 47879 TGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTC 47938 || |||||||||| |||||| || || || |||| |||| || |||||| | | ||| Sbjct 3799430 AGCGATAGATGCTAAATTACACACCGCCACTTCATCTGGAGAAGAATATTGCACAACTTC 3799371 Query 47939 AGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACA 47998 | ||||||||||| || | |||| ||||| | ||| | ||||| ||||||| Sbjct 3799370 GGTACATAGATTACTACTTCTGATGGTACCAAGATTCTTTTGATTTGACTTCCTGTTACA 3799311 Query 47999 TGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTC 48034 || || |||||||| |||| || |||||||| Sbjct 3799310 ATGATCTTTATAAAGCATGTAAGGAGTACCAGTTTC 3799275 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 48918 CTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATA 48977 ||||| | |||||| ||||||||||| | |||||| | | |||||| || |||||||| Sbjct 3797712 CTAAACACTTTTTTGGTTTCTTTATGTAAATTAGAAACTGCTATTCTTGCTGCTAATATG 3797653 Query 48978 GCATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAAT 49037 |||||||||| ||| | ||||| ||| ||| ||||||| ||||| |||| | | Sbjct 3797652 GCATAATCTGCATGTTTCGTTGTCATTGTTGCAGAAGTTTCTGCAGCTAAGTTATCAAGT 3797593 Query 49038 TCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACT 49076 || ||| || || || | ||| | || | |||||| Sbjct 3797592 TCCACAGTTGTGACTCCAGAATAAAGACCATTGATAACT 3797554 Score = 86.0 bits (94), Expect = 7e-12 Identities = 184/275 (67%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 || |||||||| || | |||| | | | ||| | ||||| |||||||| |||| Sbjct 3798202 CTTGACATTTGTTGACGTAAAGTACAAGCAGAAAAAAGAGTTGGCGATGCATGGGTAAAG 3798143 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 || |||||| | ||||| ||||| || || || | || | || ||| Sbjct 3798142 TATCGCTCTGAAGTATAATTATACGTTTCTATCACCTTTTCGAGTTCTTCTCCGTGGATA 3798083 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTC 48758 | | | || | ||| | ||||| ||||| |||||||| | ||| ||| ||||| Sbjct 3798082 GCAACCGCAACTCTCATAAGCATATGCTGAGGCCTTTCAACTACTTTTCCATTAATTTTT 3798023 Query 48759 AAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCA 48818 || | || | |||||||||||||||| |||||||| || || ||| || |||| Sbjct 3798022 AATAAGTAACTTCTTTCCAATGTTTTAAATCCAAAATAATTATAACCAAAATCTCTATCG 3797963 Query 48819 TTAATAATTGATGAATTTATTCTTTCCTTATGTTT 48853 | |||||| | ||||| ||| | || || ||||| Sbjct 3797962 TAAATAATGGCAGAATTAATTTTATCTTTGTGTTT 3797928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562091536233480