Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2 172 4e-38 seq34 105 5e-18 seq3 84.2 2e-11 >seq2 Length=17806784 Score = 172 bits (190), Expect = 4e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| ||||| | ||||| ||||| ||||| || ||||| |||||||| || | Sbjct 12206949 TTCCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAG 12207008 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| || | |||||| || ||||| |||| |||||| || || || | Sbjct 12207009 ATAAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGG 12207068 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||||||||| ||||| || || ||| |||||| ||||| || | ||| | Sbjct 12207069 GAATGCCTTCTTTATCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12207128 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||||| | |||||||| ||||| || || || || || |||||| Sbjct 12207129 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207178 Score = 168 bits (186), Expect = 5e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | || | ||| |||||||| || || || || || |||||||| |||| Sbjct 12207179 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207238 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||||||||| || || |||| |||||| || || || ||| Sbjct 12207239 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207298 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || ||||| || || ||| |||||| ||||| || | ||| ||| Sbjct 12207299 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207358 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | |||||||| ||||| || || || || || |||||| Sbjct 12207359 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207406 Score = 168 bits (186), Expect = 5e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | || | ||| |||||||| || || || || || |||||||| |||| Sbjct 12207635 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207694 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||||||||| || || |||| |||||| || || || ||| Sbjct 12207695 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207754 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || ||||| || || ||| |||||| ||||| || | ||| ||| Sbjct 12207755 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207814 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | |||||||| ||||| || || || || || |||||| Sbjct 12207815 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207862 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | ||| |||||||| || || || || || |||||||| |||| Sbjct 12207407 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207466 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||||||||| || || |||| |||||| || || || ||| Sbjct 12207467 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207526 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || ||||| || || ||| |||||| ||||| || | ||| ||| Sbjct 12207527 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207586 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | |||||||| ||||| || || || || || |||||| Sbjct 12207587 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207634 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | ||| |||||||| || || || || || |||||||| |||| Sbjct 12207863 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207922 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||||||||| || || |||| |||||| || || || ||| Sbjct 12207923 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207982 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || ||||| || || ||| |||||| ||||| || | ||| ||| Sbjct 12207983 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208042 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | |||||||| ||||| || || || || || |||||| Sbjct 12208043 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208090 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | ||| |||||||| || || || || || |||||||| |||| Sbjct 12208091 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208150 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||||||||| || || |||| |||||| || || || ||| Sbjct 12208151 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208210 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || ||||| || || ||| |||||| ||||| || | ||| ||| Sbjct 12208211 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208270 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | |||||||| ||||| || || || || || |||||| Sbjct 12208271 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208318 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | ||| |||||||| || || || || || |||||||| |||| Sbjct 12208319 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208378 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||||||||| || || |||| |||||| || || || ||| Sbjct 12208379 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208438 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || ||||| || || ||| |||||| ||||| || | ||| ||| Sbjct 12208439 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208498 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | |||||||| ||||| || || || || || |||||| Sbjct 12208499 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208546 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | ||| |||||||| || || || || || |||||||| |||| Sbjct 12208547 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208606 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||||||||| || || |||| |||||| || || || ||| Sbjct 12208607 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208666 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || ||||| || || ||| |||||| ||||| || | ||| ||| Sbjct 12208667 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208726 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | |||||||| ||||| || || || || || |||||| Sbjct 12208727 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208774 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | ||| |||||||| || || || || || |||||||| |||| Sbjct 12208775 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208834 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||||||||| || || |||| |||||| || || || ||| Sbjct 12208835 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208894 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || ||||| || || ||| |||||| ||||| || | ||| ||| Sbjct 12208895 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12208954 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||| | |||||||| ||||| || || || || || |||||| Sbjct 12208955 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12209002 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | ||| |||||||| || || || || || |||||||| |||| Sbjct 12209003 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12209062 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||||||||| || || |||| |||||| || || || ||| Sbjct 12209063 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12209122 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || || ||| |||||| ||||| || | ||| ||| Sbjct 12209123 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACT 12209182 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 |||||||| | || || || || || || |||||||| ||||||||| || Sbjct 12209183 TCAAGAGTAATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCATGATT 12209233 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| || || ||||||||||| || || || |||| | ||||| |||| || Sbjct 3493393 AACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGATAATGTTCTTCCATCTTC 3493334 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 |||||| ||||| ||||| || | ||| || ||||| || ||||| |||||||||||||| Sbjct 3493333 CAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 3493274 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| ||| ||| |||| | ||| || || | ||| ||||| || || | ||||| Sbjct 3493273 AATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCCAGTGTAATAGTTTT 3493214 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| ||||| || ||||| Sbjct 3493213 ACCTGTCAATGTTTTGACAAAAATTTGCAT 3493184 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| | || ||||| ||||| ||||||||||| | | ||||| |||| || Sbjct 3492050 AACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTC 3491991 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| ||||| ||||| || | ||| || ||||| || ||||| ||||||||||| || Sbjct 3491990 TAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTG 3491931 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| ||| ||| | || | ||||| || | || || |||||||| | ||||| Sbjct 3491930 GATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTT 3491871 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || || |||||||| Sbjct 3491870 ACCAGTCAAGGTTTTAACGAAAATCTGCAT 3491841 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| | || ||||| ||||| ||||||||||| | | ||||| |||| || Sbjct 3493165 AACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTC 3493106 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| ||||| ||||| || | ||| || ||||| || ||||| ||||||||||| || Sbjct 3493105 TAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTG 3493046 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| ||| ||| | || | ||||| || | || || |||||||| | ||||| Sbjct 3493045 GATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTT 3492986 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || || |||||||| Sbjct 3492985 ACCAGTCAAGGTTTTAACGAAAATCTGCAT 3492956 >seq34 Length=1613596 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 101280 CTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATA 101339 ||||||| ||||| || || | | ||| | | || || | ||| || || ||||| | Sbjct 772942 CTTTTTGAATATTATAGTCAGATAAAGTACGACCGTCTTCAAGTTGTTTTCCAGCAAAAA 773001 Query 101340 TCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTT 101399 | || | |||||||| || || ||||||||||||||||| || || ||| ||| ||| Sbjct 773002 TTAATCTTTGTTGATCTGGAGGGATGCCTTCTTTATCTTGTATCTTAGCTTTCACATTTT 773061 Query 101400 CTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAA 101459 | | || || || | ||| ||||| || || | || || || ||||||||||| || | Sbjct 773062 CAATCGTATCTGATGCTTCTACTTCTAGGGTAATAGTCTTCCCTGTTAAAGTTTTAACGA 773121 Query 101460 ATATCTGCATGGT 101472 | || ||||| || Sbjct 773122 AGATTTGCATTGT 773134 >seq3 Length=17417032 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 13655 AATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCC 13714 ||||||| || ||| |||| ||||||||| || ||||||||| | ||||||||||| Sbjct 15630077 AATTTTCTTTCACAGCCTTTGTAATTCATGTAACGAATTTTACCAAAAATTGGTCGCTCT 15630136 Query 13715 ATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACC 13758 |||| || |||| || || |||||||||||||| ||||| Sbjct 15630137 TTCCATCCATGATCATGCACACCACATATTGACCACATACAACC 15630180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396266533567149