Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq13 172 7e-38 >seq13 Length=8037603 Score = 172 bits (190), Expect = 7e-38 Identities = 204/272 (75%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 197023 AGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATC--TGGTTGT 197080 ||||| || ||||| |||||||| ||||| |||||||| | || | || | ||| | Sbjct 3545985 AGATCGTCTTCGCTGAAGCCCGTGCCGATTTTACAAAT--ACTCTGATATTCTTCGTTTT 3546042 Query 197081 CGGGATTGTAACAGGCGAGTAAGAAAGC-GCCGTAGGTTCCCGTTCTCTTTCCCACCCCG 197139 || ||| ||| |||||||| | |||||| ||||||||| ||||||| || || || Sbjct 3546043 CGTGATCGTAGCAGGCGAGGA-GAAAGCCGCCGTAGGTGCCCGTTCGTTTACCTTTGCCC 3546101 Query 197140 TTGAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTC 197199 | |||| |||||||| |||| ||||| || || | || || |||| ||||||||| Sbjct 3546102 AAGTAGCCGCCGATAACGACCAAATCCAACGTATCACCGACACCCTCCAAATAATCTTTC 3546161 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGG 197259 || ||||| ||||| ||| ||||||||||||||||||||| || |||| | || || Sbjct 3546162 TTGAGTTTCAGCCAATTTCGAGATCTCTTGGCAATCTCGTAAGTGGCGTCTTTATCTAGA 3546221 Query 197260 GTCTTGATCATCAATCCCTCGCAATCTTCCTT 197291 || || ||||||| || ||||| | | |||| Sbjct 3546222 GTTTTTATCATCAGACCTTCGCAGTTTCCCTT 3546253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676708815942160