Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 >seq2 Length=17806784 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||||||||||||||| || || ||| | | || || || || ||||| ||||| Sbjct 3492031 TCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAG 3491972 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || || ||||| | ||||| || || || || || || ||| ||| Sbjct 3491971 ATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTC 3491912 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| ||||| ||||| | ||||| ||||| || ||||| ||||| || Sbjct 3491911 TCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACG 3491852 Query 48756 AAAATCTGCATCGTG 48770 |||||||||||| || Sbjct 3491851 AAAATCTGCATCTTG 3491837 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||||||||||||||| || || ||| | | || || || || ||||| ||||| Sbjct 3493146 TCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAG 3493087 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || || ||||| | ||||| || || || || || || ||| ||| Sbjct 3493086 ATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTC 3493027 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| ||||| ||||| | ||||| ||||| || ||||| ||||| || Sbjct 3493026 TCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACG 3492967 Query 48756 AAAATCTGCATCGTG 48770 |||||||||||| || Sbjct 3492966 AAAATCTGCATCTTG 3492952 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| ||||| |||||||| || || || || |||| ||| | || ||||| || Sbjct 3493387 ATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGATAATGTTCTTCCATCTTCCAATTG 3493328 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||||||||| || || || || ||||| | |||| || || || || ||| || Sbjct 3493327 TTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTT 3493268 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| ||| | | || || || || || || |||| ||||| ||||| || || Sbjct 3493267 AGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCCAGTGTAATAGTTTTACCTGT 3493208 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||| ||||| |||||||| ||||| Sbjct 3493207 CAATGTTTTGACAAAAATTTGCAT 3493184 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| || ||||||||||| || || || |||||||| | |||| || || ||| Sbjct 3492223 TCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 3492164 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| ||| ||| | | || || || || || || |||| ||| || Sbjct 3492163 TCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCCAACGTGATG 3492104 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||| |||||||| ||||| Sbjct 3492103 GTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCAT 3492069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380926192942611