Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq460 776 0.0 seq157 168 2e-37 >seq460 Length=1249 Score = 776 bits (860), Expect = 0.0 Identities = 706/890 (79%), Gaps = 15/890 (2%) Strand=Plus/Minus Query 20400 AGGCCAACCTGGCGAACGGTCGGGGACTCAGAAACCAGCCATATGTCGGACTCTTCAAAC 20459 || ||||||||||||||||||||| |||||||||||| ||| || ||||||||||||||| Sbjct 1150 AGTCCAACCTGGCGAACGGTCGGGAACTCAGAAACCAACCACATATCGGACTCTTCAAAC 1091 Query 20460 ATTTCTTCCAGCATGCGGTTTAGCTTTTCCCGATCGCTTTTACTTGCATCGCTATTCAAG 20519 ||||| || ||||||||||| || ||||||||||||||||| |||||||||||||||||| Sbjct 1090 ATTTCCTCGAGCATGCGGTTCAGTTTTTCCCGATCGCTTTTGCTTGCATCGCTATTCAAG 1031 Query 20520 CCGTTCGCCTGCATCGGCTTCACCTTCACTTCGGCATCAGGGAAAATCTGATGAACCCGC 20579 ||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 1030 CCGTTTGCCTGCATCGGCTTTACCTTCACTTCGGCATCAGGGAAAATCTGGTGCACCCGC 971 Query 20580 TTCGTCAGCTCGGCCAGAATGATCTCTCTGGCCCCTTCGAGCCCCGCAACATTACGCTTG 20639 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 970 TTCGTCAGCTCGGCCAGAATGATCTCTCTGGCCCCTTCGAGCCCCTCAACATTACGCTTG 911 Query 20640 TCATATACCAGTTCAACAAACATTGCTAACCCTCTT-------------GCCTAA-CTTG 20685 ||||| ||||||||||||||||| | | || |||| |||| |||| Sbjct 910 TCATAAACCAGTTCAACAAACATACCGATCC-TCTTATAAGTGAAAACTGCCTGTGCTTG 852 Query 20686 ATCTGTAATCACAAAAATACTACTGTATATGCATACAGTCAATAGTCCAGAGAGGGCGCT 20745 |||||| || ||||||||| ||||||||||||||||| ||| | || ||||| || Sbjct 851 ATCTGTTTTCGTAAAAATACTGCTGTATATGCATACAGTAAATGAGCGAGTGAGGGTGCA 792 Query 20746 CTTATGCCTCGTCAACTTGATATACGTGCAGCCTTTTTAGCGGCCATACAACAGAATCCT 20805 ||||||||||||||| ||||| | ||| || ||| | ||||||||||| || || || Sbjct 791 TTTATGCCTCGTCAACCGGATATTCATGCTGCTTTTATTGCGGCCATACAGCAAAACCCG 732 Query 20806 AAGGGATATCTTTGTTTGAACACTGACAAATTCATCACTGAATTGCGCTTTAGGAATTGG 20865 ||||| ||||| ||| || | || ||||| |||||| ||||| ||| || | ||| Sbjct 731 AAGGGCTATCTCTGTCTGCATACAGACAAGTTCATCGCTGAACTGCAGGAGGGGCACTGG 672 Query 20866 CATTTCAGCCAGGCAGATGCCAATGCCTGGATTAAGAGATACCAACCAGACTTTGCTGAT 20925 |||||||||||||| ||||| ||| | ||||| || ||||||| || ||||| || ||| Sbjct 671 CATTTCAGCCAGGCGGATGCAAATACATGGATCGAGCGATACCAGCCGGACTTCGCCGAT 612 Query 20926 AAGACGACGGATGGAAGCGATAACCGTTACTGGATCTTGCGTAATATGGGGAGGGTTTTC 20985 |||||||| | |||||||| |||| ||||||||| ||||||| ||||||||||||||| Sbjct 611 AAGACGACAAACGGAAGCGAGAACCAGTACTGGATCCTGCGTAACATGGGGAGGGTTTTC 552 Query 20986 TGATGGGCTTTCCTTCACCTGCTATGGATTACCAGGAACAGCGGTTAACCATAGATCTGT 21045 | ||||| ||||| || || ||||||||||||||||| |||| | || |||||| | Sbjct 551 TAATGGGATTTCCATCGCCAGCTATGGATTACCAGGAGTAGCGCATGACGATAGATGTTA 492 Query 21046 TATGCGGAATTGATGGGAACTGCAGGGTAATAGAAACATCCTGTGGTTGGGCAGTGATTA 21105 | || || | || |||||| |||| || ||||| || || || ||||| || |||| Sbjct 491 TCTGTGGTGTAGACAACAACTGCCGGGTTATTGAAACTTCATGCGGCTGGGCCGTTATTA 432 Query 21106 ACATTGCTCTAAGGCCAGAGCAGGGAGATACGCTACTGGTAAGAATGGATAACAGGAACG 21165 | | ||| | ||||| || |||||| | ||||| || |||||| || ||| Sbjct 431 AAGTCAGTCTGAATCCAGAAAGAGGGGATACGTTGCTGGTTAGCATGGATGGGAGAAACC 372 Query 21166 AGTTTGCAAAGCTATACGGGGCGGCATTGATAACTGAAGATGGTGAAGCGATAGAAGGCG 21225 |||||| |||||| || |||| | ||||| ||||| ||||| ||||| ||||| | Sbjct 371 AGTTTGTGAAGCTACTGGGTCAGGCACTTATAACAGAAGAGGGTGAGGCGATCGAAGGAG 312 Query 21226 ACGCGCTGGATGATGTGGAAGTGTTTGGTGTGCTAACGCATAGTCTTAAC 21275 | || || ||||||| ||| | || || || || |||| |||||| Sbjct 311 AAGCCTTGAATGATGTTACGGTGCTCGGCGTTCTTACACATACGCTTAAC 262 >seq157 Length=2930 Score = 168 bits (186), Expect = 2e-37 Identities = 122/137 (89%), Gaps = 7/137 (5%) Strand=Plus/Minus Query 21483 TTTAAAATCCCTCGGCGTTCGCGCTGTGTGGGTTCAAGTCCCACTCCGGGTACCATGGGA 21542 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2868 TTTAAAATCCCTCGGCGTTCGCGCTGTGTGGGTTCAAGTCCCACTCCGGCTACCATGGGA 2809 Query 21543 AAACTAGAATAAAATCAATG--ATAAGCAGTGTCGTATAAACCACCGAAAGGTGGTTTTT 21600 || ||||||| |||| | |||||||||||||| |||||||||||||||||||||| Sbjct 2808 AACAAAGAATAA--TCAAAGCAATAAGCAGTGTCGT-GAAACCACCGAAAGGTGGTTTTT 2752 Query 21601 TATTG--TGtttttttC 21615 | || |||||||||| Sbjct 2751 TTGTGCCTGTTTTTTTC 2735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127967466200294