Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq64 228 2e-55 >seq64 Length=39090 Score = 228 bits (252), Expect = 2e-55 Identities = 497/729 (68%), Gaps = 25/729 (3%) Strand=Plus/Minus Query 36455 CGGCACATCAGCCAGCCGTGTCGTATAACACGGCGACAGCATTTCCCGCTTCATCTGCCA 36514 ||| | ||||||| ||||| || || || |||||||||||||| ||||||||||| Sbjct 21503 CGGAATATCAGCCCAGCGTGTAGTGTAGGCAGGAGACAGCATTTCCCGTTTCATCTGCCA 21444 Query 36515 CGCCTGC-TGGATACCCTGCCCCGCAAAATAGAGCGTTCCCCTGCCCTG-CTGGTTGAGT 36572 ||| | | | ||||| |||||||| | | | |||||| |||| | |||||| | Sbjct 21443 -GCCGGTATCCGTGCCCTGACCCGCAAACCACACC-TTCCCCAGCCCGGACTGGTTAATG 21386 Query 36573 CTGTCCATCAGTGACATCAGCGCCTCGCTGTTCGCGCGCGGCGCGTTCTCGTCAAACAGG 36632 | ||||| || ||||||| |||||| || ||||| || ||| |||||| Sbjct 21385 CCGTCCAGCACCTTCATCAGCCGGGCGCTGTCCGGTCGCGGGCGGTCCTCACTGAACAGG 21326 Query 36633 TTCAGCTGCGCCACGCCCT---GGCTGAAAAAGTCACCCAGCATAACGCCCGCCTTCTGG 36689 |||||||| | ||| | || |||| |||||||||||| | ||| |||||| | Sbjct 21325 TTCAGCTGGCTGATGCCGTCCGGGGTGAA---GTCACCCAGCATGATGCCGGCCTTCATG 21269 Query 36690 TACCGGTGGCCGTCGCGCCAGACCGCATCAAGGCAGCCCGTCGCCGCGGCGATAATGTCG 36749 || ||||| || || |||||| || || | | | | ||| ||||||| ||||| Sbjct 21268 TAGCGGTGCCCTTCCTGCCAGATACGGTCCAGCGAACGCATGGCCACGGCGATGATGTCC 21209 Query 36750 CGCGTGTCCTGTGTGG---GCGTCAGGAGCTTAGTC-CCGGCGTGGTTGCCGTAATACGG 36805 || ||||||||||||| ||||||| || || |||| | |||||||||| ||| Sbjct 21208 CGGGTGTCCTGTGTGGGCAGCGTCAG----TTTTTCGCCGGTGCTGTTGCCGTAAAACGT 21153 Query 36806 TTCA---GCAGAGAACGGCGACGTTTTCACGAACACCGAAATGTACCGGCAGAACTGATG 36862 |||| | | | || || || | |||||| | || || |||||||| | Sbjct 21152 TTCATTCCCCGCGTGAGGGGAGGTGCGGATGAACACGCTGACGTGGCGACAGAACTGCCG 21093 Query 36863 CTCGCCGCGGAGCTTTTCCGCCGCGCGCGCTGCATAGCTGCAGATAGCCTGGCGCATCGC 36922 || || ||||| || || || | || || ||||| ||| | ||||| |||| || Sbjct 21092 TTCACCCCGGAGTTTCTCTGCGCCCCGGGCGGCATACTGGCACAGGGCCTGCTGCATGGC 21033 Query 36923 -TTCATAGTCAGTGATTCGCTCCCCGAATGACCGGCTGCAGACGATTTCCTGTTTTGCCG 36981 || | || ||||| ||||| || || ||| |||||| || | |||||||| || Sbjct 21032 AGTCTTCGT-GGTGATGCGCTCACCAAAGCTGCGGGAGCAGACTATCTGCTGTTTTGACG 20974 Query 36982 GGGCAAACTCCTCGATCTCCAGACAGGGCTCGCCGCGCAGCTCGCGCACGGTGCGCTCCA 37041 | | | ||| || || | |||| ||| ||| ||||| |||||||||||||||| Sbjct 20973 GCGGCATCTCTTCCATTGGAATGCAGGACTCCCCGTTGAGCTCACGCACGGTGCGCTCCA 20914 Query 37042 GCACGACGTTAAAGTGTTTGCGGATAAA-GCGGATGTCGGTATCACAGAGCTGCAGTGCA 37100 | || ||| | |||| |||||||||||| || | || ||| |||||||| || Sbjct 20913 GTACCACGGTGAAGTTTTTGCGGATAAACGCCG-GGTGGGTGCGCGCCAGCTGCAGGGCG 20855 Query 37101 TTTTTAATACTCATTGCCTCCAGCTTTCTGGCAATACGCCGGCCGACGCCCCAGACTTCC 37160 ||| ||| | | | | |||||| | | || |||||| || ||||| | |||| Sbjct 20854 GTTTCAATGCCCGTCATGTTCAGCTTCTTACCGATTTTCCGGCCCACACCCCATATTTCC 20795 Query 37161 TCCACCGGC 37169 ||||||||| Sbjct 20794 TCCACCGGC 20786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124713161153516