Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq77 98.7 9e-16 >seq77 Length=12250 Score = 98.7 bits (108), Expect = 9e-16 Identities = 246/370 (66%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 38636 GCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTCAATAGTCTGCACGAAT 38695 ||||| || || | ||| || | |||| || |||| || ||||| || || | || Sbjct 376 GCAATCTCCTCAAGGCAAGCCACTTTCATGCCCTGACGCTTTTCAATGGTATGAATAAAC 317 Query 38696 TGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCAAGTAAATCCTCGTCCG 38755 || ||||||| ||| || |||| || || || || ||||| | ||| || || || Sbjct 316 TGGGACGCTTCCACCAGGCTATCGTGAGTACCAGTATCCAGCCATGCAAAACCACGACCT 257 Query 38756 AGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGATTGATATCAGTGATCTCC 38815 || | ||| || || || || | | || || || | | || | | || || || Sbjct 256 AGCAATTCAACCTGCAATTTACCCTGCTCGAGATACATCTGGTTAAGAGTCGTAATTTCA 197 Query 38816 AGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAATAACAGAGTTATCATAG 38875 ||||| |||||||| || || | || | | ||| || | ||| ||||| ||| Sbjct 196 AGTTCGCCACGCGCTGATGGCTTAACCTGTTTTGCCATTTCTACAACGTTTTTATCGTAG 137 Query 38876 AAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAGGTTTCTCTTCAATAGAA 38935 ||||| | || || || || | | |||||| || ||| ||||||||||| || ||| Sbjct 136 AAATAGAGGCCAGTTACTGCCCAGTTTGATTTTGGTTTTAACGGTTTCTCTTCGATGGAA 77 Query 38936 ATAGC-TTGACGATTACTC-CCAAATTCAACCACACCGAATCGTTCAGGATCTTTCACCA 38993 | || |||| | | ||| ||||||| || || || || |||||||| || | |||| Sbjct 76 AGCGCTTTGA--AGTTCTCGTCAAATTCTACGACGCCAAAACGTTCAGGGTCCTGCACCT 19 Query 38994 AATACCCGAA 39003 ||| || || Sbjct 18 GATAACCAAA 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472615884338840