Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq8 114 7e-21 >seq8 Length=10932247 Score = 114 bits (126), Expect = 7e-21 Identities = 200/287 (70%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 25990 TTTTCCNNNATTCTTTTTTAGATCTAAGAAAT-CAAAAATATCTGAGTGCCATGGTTCTA 26048 ||| || ||| || |||||||| ||||||| |||| ||||| | ||||| ||||| | Sbjct 3798659 TTTACCTGTATTTTTCTTTAGATC-AAGAAATTCAAATATATCAGCATGCCACGGTTCCA 3798601 Query 26049 AATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTT 26108 |||| || ||||| || ||| || |||||||||||| || |||| || || | Sbjct 3798600 AATACATGGCAAATGCCCCAGGTCTCTTATTTCCACCTTGATCAACATATCGCGCTGTAT 3798541 Query 26109 CATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA-TGAATC 26167 ||| ||||| | | ||| |||||||| ||| | || | ||| ||||||| | || || Sbjct 3798540 TATTATAAACTCTTATCATAGGAACTAAGCCATTCGATATTCCATTTGTGCCAGCGATTC 3798481 Query 26168 TTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAA 26227 | | | ||| | | ||||||| ||| || | ||| || ||||| || |||| | Sbjct 3798480 TAGTA-CCTTTTGCTCTAATAGTATGAACACTCAAACCAATGCCACCTGCAGATTTACTA 3798422 Query 26228 ATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATC 26274 | |||||| | | |||||| ||||||||| |||||||| Sbjct 3798421 ACTAATGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATC 3798375 Score = 86.0 bits (94), Expect = 3e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 25924 AACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCAT 25983 |||| | |||||||||||||| || ||||||| ||||||||||| ||||||||||| | Sbjct 3798933 AACTCTTTCCATAAATAAATCAGGGATCCACAAAGCATAAAATAACTCTCTCGCTCTATT 3798874 Query 25984 TTCTTCTTTTCC 25995 ||||||||| || Sbjct 3798873 TTCTTCTTTACC 3798862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253032422796275