Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2 190 4e-43 seq34 167 4e-36 >seq2 Length=17806784 Score = 190 bits (210), Expect = 4e-43 Identities = 185/238 (78%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 |||||| || ||||| | | ||||| || ||||| | || | ||||| || || Sbjct 3493420 AATTTAAATTCCACCACGAAGGCGAAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTT 3493361 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||||||| ||||| ||| || |||||||| ||||||||||| | | || || Sbjct 3493360 ATAGTCGGATAATGTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTG 3493301 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||||||||| ||||| | ||| | |||| |||||||||||| Sbjct 3493300 ATCTGGTGGAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGA 3493241 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcatt 193361 || |||||||| || || |||||||||||||| | ||||| ||||| ||||||||| Sbjct 3493240 AGCTTCAACTTCCAGTGTAATAGTTTTACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183 Score = 152 bits (168), Expect = 9e-32 Identities = 215/300 (72%), Gaps = 13/300 (4%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | ||||| || ||||||||||| | || || |||||| Sbjct 3492077 AATTTGCATTCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATT 3492018 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | |||||| ||| ||||||||||| || ||||| |||| | || || Sbjct 3492017 GTAATCTGAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTG 3491958 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||||||||| || ||||||| ||| | ||| ||| || || || Sbjct 3491957 ATCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGA 3491898 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcattt- 193362 | ||| || || ||||| ||||||||||| || | ||||| || || || ||||| | Sbjct 3491897 TGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCATCTT 3491838 Query 193363 -----tatt----agtaaaataattattttaaataatatatactttatattttaacatta 193413 |||| || ||||| || | ||||||| | || || ||||||||||| || Sbjct 3491837 GAAACTATTCAAGAGAAAAAT-ATGTTATTAAATATTTTAAAC--AATATTTTAACAGTA 3491781 Score = 152 bits (168), Expect = 9e-32 Identities = 215/300 (72%), Gaps = 13/300 (4%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | ||||| || ||||||||||| | || || |||||| Sbjct 3493192 AATTTGCATTCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATT 3493133 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | |||||| ||| ||||||||||| || ||||| |||| | || || Sbjct 3493132 GTAATCTGAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTG 3493073 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||||||||| || ||||||| ||| | ||| ||| || || || Sbjct 3493072 ATCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGA 3493013 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcattt- 193362 | ||| || || ||||| ||||||||||| || | ||||| || || || ||||| | Sbjct 3493012 TGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCATCTT 3492953 Query 193363 -----tatt----agtaaaataattattttaaataatatatactttatattttaacatta 193413 |||| || ||||| || | ||||||| | || || ||||||||||| || Sbjct 3492952 GAAACTATTCAAGAGAAAAAT-ATGTTATTAAATATTTTAAAC--AATATTTTAACAGTA 3492896 Score = 131 bits (144), Expect = 3e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 ||||| ||| || |||||||| ||||||||||| | | |||||||| || || ||| Sbjct 3492232 GTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATT 3492173 Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||| ||||| || || | ||| | |||| ||||||||| |||| |||||||| Sbjct 3492172 CCTTCTTTGTCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCC 3492113 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcatt 193361 | || || ||||| || |||| ||||| ||||| ||||||||| Sbjct 3492112 AACGTGATGGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCATT 3492068 Score = 116 bits (128), Expect = 7e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||| || || ||||||||||| ||||| || | || | |||| ||| || ||||| Sbjct 12206941 AATCTACATTCCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATT 12207000 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| ||||| || | ||| || | ||| || || ||||| || | | ||| || Sbjct 12207001 GTAGTCAGATAAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTG 12207060 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || ||||||||||| || || || | || | |||| || || || || Sbjct 12207061 GTCTGGGGGAATGCCTTCTTTATCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGA 12207120 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 || || ||||| ||||| || ||||| ||||||| || || || || |||||||| Sbjct 12207121 AGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207177 >seq34 Length=1613596 Score = 167 bits (184), Expect = 4e-36 Identities = 160/203 (79%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||||||||| ||||| || | | || || | ||||||||| |||||||||||||| Sbjct 772949 AATATTATAGTCAGATAAAGTACGACCGTCTTCAAGTTGTTTTCCAGCAAAAATTAATCT 773008 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||| ||||| || ||||||||||||||||| || | ||| | |||| ||| || Sbjct 773009 TTGTTGATCTGGAGGGATGCCTTCTTTATCTTGTATCTTAGCTTTCACATTTTCAATCGT 773068 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttg 193357 ||| || | || |||||||| || ||||| || ||||||| ||||| || || ||||| Sbjct 773069 ATCTGATGCTTCTACTTCTAGGGTAATAGTCTTCCCTGTTAAAGTTTTAACGAAGATTTG 773128 Query 193358 catttt--atta-gtaaaataat 193377 |||| | |||| | ||||||| Sbjct 773129 CATTGTCAATTATCTGAAATAAT 773151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899626769364240