Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 167 5e-36 seq34 161 2e-34 seq3 89.7 1e-12 >seq2 Length=17806784 Score = 167 bits (184), Expect = 5e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 ||| ||||| | ||| || | || | ||| | || | ||||| ||| ||||| || Sbjct 3493414 AATTCCACCACGAAGGCGAAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTC 3493355 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||||||||| | |||| |||||||||||||| ||||| || | | || ||||| || Sbjct 3493354 GGATAATGTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGG 3493295 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| ||||||||||||||||| |||||| ||| ||||| |||| ||| || | ||| Sbjct 3493294 TGGAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTC 3493235 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || ||||| |||||||| || |||||||| | ||| || |||||| Sbjct 3493234 AACTTCCAGTGTAATAGTTTTACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183 Score = 149 bits (164), Expect = 1e-30 Identities = 175/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||| || | || | ||| || || | || ||| || ||||| ||||| Sbjct 3492070 ATTCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGA-ATATTGTAATC 3492012 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | ||||| |||| || |||||||||||||||||||||| | || ||||| || Sbjct 3492011 TGAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGG 3491952 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||||||||| || ||||| ||| ||||| || | ||||| | || Sbjct 3491951 GGGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTC 3491892 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || |||||||| ||||||||||| || ||||||| || |||||||| || Sbjct 3491891 TACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCATCTT 3491838 Score = 149 bits (164), Expect = 1e-30 Identities = 175/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||| || | || | ||| || || | || ||| || ||||| ||||| Sbjct 3493185 ATTCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGA-ATATTGTAATC 3493127 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | ||||| |||| || |||||||||||||||||||||| | || ||||| || Sbjct 3493126 TGAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGG 3493067 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||||||||| || ||||| ||| ||||| || | ||||| | || Sbjct 3493066 GGGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTC 3493007 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || |||||||| ||||||||||| || ||||||| || |||||||| || Sbjct 3493006 TACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCATCTT 3492953 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||| | ||||| || | |||| ||| || |||||| || ||| Sbjct 12206948 ATTCCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCA 12207007 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || ||| |||| || | ||| || ||||||||||| | | ||| || || || Sbjct 12207008 GATAAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGG 12207067 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || ||| || ||||| ||| | || || | ||| Sbjct 12207068 GGAATGCCTTCTTTATCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCG 12207127 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| ||||| || |||||||| |||| || || ||||| Sbjct 12207128 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207177 Score = 132 bits (146), Expect = 9e-26 Identities = 129/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 192372 TGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTAT 192431 ||||| | |||| |||||||||||||| ||||| || | | |||||||| ||||| || Sbjct 3492233 TGTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAAT 3492174 Query 192432 TCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTC 192491 ||||||||| ||||| || || ||| ||||| |||| ||| || | ||| ||||| Sbjct 3492173 TCCTTCTTTGTCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTC 3492114 Query 192492 TAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || |||||||| |||||||| ||||||| ||| || |||||| Sbjct 3492113 CAACGTGATGGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCATT 3492068 >seq34 Length=1613596 Score = 161 bits (178), Expect = 2e-34 Identities = 158/201 (79%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 192337 AAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTA 192396 ||||| ||| ||| || |||||||| |||||||| || || | || || | |||||| Sbjct 772934 AAAGTTACCTTTTT-GA-ATATTATAGTCAGATAAAGTACGACCGTCTTCAAGTTGTTTT 772991 Query 192397 CCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTT 192456 |||||||| |||||||| |||||||| || || || ||||||||||||||||| ||| | Sbjct 772992 CCAGCAAAAATTAATCTTTGTTGATCTGGAGGGATGCCTTCTTTATCTTGTATCTTAGCT 773051 Query 192457 TTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAAT 192516 || ||||| || | |||||| | |||||||||||| ||||| || || || ||||| Sbjct 773052 TTCACATTTTCAATCGTATCTGATGCTTCTACTTCTAGGGTAATAGTCTTCCCTGTTAAA 773111 Query 192517 GTTTTAATAAATATCTGCATT 192537 ||||||| || || |||||| Sbjct 773112 GTTTTAACGAAGATTTGCATT 773132 >seq3 Length=17417032 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49848 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 49907 ||||||| || || | ||||||||| || || | ||| ||||||| |||||||||||| Sbjct 7878542 TCGTCCCGCGAAATCAGTTCATTACTGAATGTCAGTCCAGGCATTAGTCCTCTCTTTTTC 7878483 Query 49908 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCT 49967 ||||| ||||| | || ||||| | | ||||| || |||||||| ||||| || Sbjct 7878482 AGCCAGAATATGGCAGCGAAACTGCCACTGAAGAAGATTCCCTCGACCGCAGCAAAGGCA 7878423 Query 49968 ATTA 49971 |||| Sbjct 7878422 ATTA 7878419 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 50115 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCT 50174 ||||||||||| ||||| ||| |||||| || | ||| || ||| || || || Sbjct 7878170 GAATACATTTCGGAATGAACATTTTCCATCGCCACTTGGAAGCCATAGAAGCATCGAGCC 7878111 Query 50175 TCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 50234 |||| ||| ||||| ||| || || || | ||||||| ||||||||||| Sbjct 7878110 TCTGTGATCTGGACTTCCTGGCTGAAGCGCTCGACGAGATTCTCATTCACAATACCATCG 7878051 Query 50235 GATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 50294 ||||| |||||||| || | ||||| |||||||| || || || || ||||| | | Sbjct 7878050 GATGCGGCGAAGAAAGCAAGAACGTGGGAGATAAAATGCTTCTCTTTCTCGTTTAATTGT 7877991 Query 50295 TCCCAA 50300 | |||| Sbjct 7877990 TGCCAA 7877985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984449008261950