Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq34 170 3e-37 seq2 149 1e-30 seq3 87.8 3e-12 >seq34 Length=1613596 Score = 170 bits (188), Expect = 3e-37 Identities = 159/201 (79%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 171870 AAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTA 171929 ||||| ||| ||| ||||||||| || ||||||| || |||| || | |||||| Sbjct 772934 AAAGTTACCTTTTTG--AATATTATAGTCAGATAAAGTACGACCGTCTTCAAGTTGTTTT 772991 Query 171930 CCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTT 171989 ||||||||||||||||| ||||| || || || || ||||||||||||||||| ||| | Sbjct 772992 CCAGCAAAAATTAATCTTTGTTGATCTGGAGGGATGCCTTCTTTATCTTGTATCTTAGCT 773051 Query 171990 TTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAAT 172049 || ||||| || |||||||| | |||||||||||| ||||| || || || ||||| Sbjct 773052 TTCACATTTTCAATCGTATCTGATGCTTCTACTTCTAGGGTAATAGTCTTCCCTGTTAAA 773111 Query 172050 GTTTTAATGAATATCTGCATT 172070 ||||||| ||| || |||||| Sbjct 773112 GTTTTAACGAAGATTTGCATT 773132 >seq2 Length=17806784 Score = 149 bits (164), Expect = 1e-30 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 ||| ||||| | ||| || | || | ||| | || | ||||| || ||||| || Sbjct 3493414 AATTCCACCACGAAGGCGAAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTC 3493355 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 ||||| | || | | || |||||||||||||| |||||||| | | || || || || Sbjct 3493354 GGATAATGTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGG 3493295 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| ||||||||||||||||| |||||| ||| ||||| |||||||| || | ||| Sbjct 3493294 TGGAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTC 3493235 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || ||||| |||||||| || |||||||| | || || |||||| Sbjct 3493234 AACTTCCAGTGTAATAGTTTTACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || | ||| || || | || || |||||| |||||| Sbjct 3492070 ATTCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCT 3492011 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || ||||||||||||||||| |||| | || || || || Sbjct 3492010 GAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGG 3491951 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||||||||| || ||||| ||| ||||| || || ||||| | ||| Sbjct 3491950 GGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCT 3491891 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || |||||||| ||||||||||| || ||||||| ||| |||||||| || Sbjct 3491890 ACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCATCTT 3491838 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || | ||| || || | || || |||||| |||||| Sbjct 3493185 ATTCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCT 3493126 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || ||||||||||||||||| |||| | || || || || Sbjct 3493125 GAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGG 3493066 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||||||||| || ||||| ||| ||||| || || ||||| | ||| Sbjct 3493065 GGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCT 3493006 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || |||||||| ||||||||||| || ||||||| ||| |||||||| || Sbjct 3493005 ACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCATCTT 3492953 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | ||||| || | |||| ||| || ||||| || || Sbjct 12206948 ATTCCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCA 12207007 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| ||| | || || | ||| || |||||||| || | | ||| ||||| || Sbjct 12207008 GATAAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGG 12207067 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || || ||| || ||||| ||| || || || | ||| Sbjct 12207068 GGAATGCCTTCTTTATCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCG 12207127 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| ||||| || |||||||| |||| ||| || ||||| Sbjct 12207128 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207177 Score = 123 bits (136), Expect = 5e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||||||||| |||||||| | | ||||| || ||||| ||||||||||| Sbjct 3492223 TCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 3492164 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || ||| ||||| |||||||| || | ||| ||||| | || ||| Sbjct 3492163 TCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCCAACGTGATG 3492104 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| |||||||| ||||||| || || |||||| Sbjct 3492103 GTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCATT 3492068 >seq3 Length=17417032 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39148 CTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 39207 ||||||||| || || | ||||||||| || || | ||| ||||||| ||||||||||| Sbjct 7878544 CTTCGTCCCGCGAAATCAGTTCATTACTGAATGTCAGTCCAGGCATTAGTCCTCTCTTTT 7878485 Query 39208 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATG 39267 | ||||| ||||| | || ||||| | | ||||| || ||||| || ||||| | Sbjct 7878484 TCAGCCAGAATATGGCAGCGAAACTGCCACTGAAGAAGATTCCCTCGACCGCAGCAAAGG 7878425 Query 39268 CTATTA 39273 | |||| Sbjct 7878424 CAATTA 7878419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905108201010600