Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq223 244 5e-60 >seq223 Length=2082 Score = 244 bits (270), Expect = 5e-60 Identities = 312/425 (73%), Gaps = 6/425 (1%) Strand=Plus/Minus Query 59782 AACACGGCCGACATGATCCGGCTCATCATTCGTGACGAGGCGGTGCACGGCTACTACATC 59841 ||||| ||||| |||| |||||||||||||| || || ||||||||||| || ||||| Sbjct 2081 AACACCGCCGATTTGATTCGGCTCATCATTCGCGATGAAGCGGTGCACGGGTATTACATT 2022 Query 59842 GGATACAAGTTCCAGCGCGGCCTGGAGAC--TCAGAACGAGGCTCGCCGCGAGGAGCTGA 59899 || || |||| ||| || ||||||| |||| |||||| ||||||||||| | Sbjct 2021 GGCTATAAGTATCAGAAAGGGCTGGAGAAAGTCAG--CGAGGCGAAGCGCGAGGAGCTTA 1964 Query 59900 AGGACTACACGTACGGTCTGCTACTCGAGTTGTACGACAACGAGATTGAG-TACACGCAG 59958 | | || | || | |||| | || |||||||||||||| | ||| || ||| || Sbjct 1963 AAGGCTTTGCACTCGATTTGCTGATGGATCTGTACGACAACGAGCT-GAGCTATACGGAG 1905 Query 59959 GATCTGTACGACGGCGTGGGACTGACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCC 60018 || || |||| |||| || | || || || ||| ||||| ||||||||||| Sbjct 1904 GAACTCTACGCCGGCACCGGCTGGGAGGACGACGTGAAGGCTTTCCTCTGCTACAACGCC 1845 Query 60019 AACAAGGCGCTGATGAATCTCGGCTACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTG 60078 ||||||||||||||||| || |||||||| ||||| ||||||| || | |||||| Sbjct 1844 AACAAGGCGCTGATGAACCTGGGCTACGACGCGCTTTTCCCGCCGGAGATGGCGGAGGTG 1785 Query 60079 AATGCGGCGATCTTGGCGGCACTGTCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCG 60138 || ||||||| |||| || ||||| || | ||||| |||||||| ||||||||| Sbjct 1784 AACCCGGCGATTCTGGCTGCGCTGTCGCCCAATGCCGACGAAAACCACGATTTCTTCTCG 1725 Query 60139 GGCTCTGGCAGCACGTATGTGATTGGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGAC 60198 || |||||| |||||||||| ||||| || | || || || || || || ||||| Sbjct 1724 GGATCTGGCTCATCGTATGTGATGGGCAAAGCGGTGGAAACCGAGGATGAAGACTGGGAT 1665 Query 60199 TTCTA 60203 || || Sbjct 1664 TTTTA 1660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258923446386132