Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq32 138 3e-27 seq16 100 8e-16 >seq32 Length=2006704 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||| ||||||||||||||||||| |||||||| | | ||| || ||| || | Sbjct 1359501 CTTTTTCTACCAACAGCATCAATTTCATCAATGAATAAAATACAAGGTGAAGCTTTACGT 1359442 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || || ||||| | ||||||||||| |||| ||||| |||||| ||||||| | |||| Sbjct 1359441 GCCATAGCAAACATATCTCTTACACGTGATGGTCCAACTCCAACAAACATTTCCAGAAAT 1359382 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || ||| | || ||| | || | ||| ||||||| |||||| ||| | || || Sbjct 1359381 TCTGAACCAGACACTGTTAAAAAAGATACGCTTGCTTCACCTGCTGTTGCTTTAGCAAGT 1359322 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226 | ||||||||| || ||||| || || Sbjct 1359321 AATGTCTTACCAGTACCAGGAGGGCC 1359296 >seq16 Length=6357092 Score = 100 bits (110), Expect = 8e-16 Identities = 205/305 (67%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||||||| || |||||| | ||||| |||||| ||| || | |||||| Sbjct 157116 TTTCTTACTGTGCCATCATAGTGCACCATAACTGATTCCATTGCCTTTATGAGACGACGT 157175 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||| |||||| | ||||||||||| |||||||| ||||| | ||||| ||| Sbjct 157176 TGAATATATCCAGTTTCTGCAGTTTTTACAGCAGTATCAATGAGACCCTCGCGACCTCCC 157235 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||||||| | | || || || ||| ||| | | || ||||||| || Sbjct 157236 ATAGCATGGAAGTAAAATTCGGATGGAGTCAGACCCGCAAGATATGAATTCTCAACAAAG 157295 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 || | | || || || || ||| |||| ||||| || || | || | | Sbjct 157296 CCTCTAGATTCTGGACCATAATCATCTTTGATAAAATGTGGTAGAGTACGTTTGCGAAAA 157355 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 || | || || ||||| || || ||||| || || || | || | ||| | ||| || Sbjct 157356 CCAAAAGGTATGCGCTTCCCTTCGACGTTTTGTTGCCCGACACAGGCAATAACCTGGGAT 157415 Query 302839 ATATT 302843 ||||| Sbjct 157416 ATATT 157420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471771266722009