Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq64 421 2e-113 seq137 98.7 3e-16 >seq64 Length=39090 Score = 421 bits (466), Expect = 2e-113 Identities = 737/1054 (70%), Gaps = 24/1054 (2%) Strand=Plus/Minus Query 39310 TTCCATTGGGCTGTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTA 39369 || || |||| ||||||||||||||| || ||||| ||||| || || | ||| | | Sbjct 36297 TTTCACTGGGAGGTTATCCCAGCAGTTGCCCCGCCGACTCATGCTTTGCTTTATCCGACA 36238 Query 39370 TCGCCACAATAACTGCCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGA 39429 ||||||| | |||| | ||| ||| |||||||| || ||||| || ||||||| Sbjct 36237 GCGCCACAGTGCTTGCCGATATTTGCG-GCTGGTATAATGGCTACCCTGGTCACTGTGGA 36179 Query 39430 ACATCAC-CCCGCCGGGCTTACCACGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTG 39488 |||| || || | |||| ||| || | ||||| ||||| | || |||||| | || Sbjct 36178 ACATTACGCCTGTTGGGC-GACCTCGCATCTCCCAGGCCATCTGCAACGCTTTGACCGTC 36120 Query 39489 AGCCTGC--TGTCCGGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGT 39546 || ||| ||||||| | ||||||| |||||||||| ||||| | |||||||| | Sbjct 36119 AG--TGCCGAGTCCGGCAACGTCGACATGACCCAGCCCACCGGTTTACGGGCGAACAGAT 36062 Query 39547 CGAGAACAACGGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGC 39606 | || || || || || || ||||||| || || ||||||||| |||||||||| || | Sbjct 36061 CCAGCACCACCGCCAGATAAGCCCAGCATTTGCCTGTCCAGATACAGGTCACATCGCCAC 36002 Query 39607 ACCACACCTGATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAA 39666 |||| ||||| | ||| || || || |||||||| | | || | || | || ||| Sbjct 36001 ACCAGACCTGGTCTGGTTCTGTGACCGCGAACTGGCGGTTGAGATGATTCTGTATTTCAA 35942 Query 39667 CATGTTCATGACCACCACGTTTATACCGGTGAGTCGGCTGCTGACAGCTGACCAGCCCCA 39726 | || || | ||| ||||| | ||| ||| || || | |||||||| | | |||| Sbjct 35941 CGTGCTCGTTACCGCCACGCCTGTACTTGTGGGTGGGTACCAGACAGCTGGCGATGCCCA 35882 Query 39727 GCTCTTTCATGAGCCTGCCAGCAAGCCAGCGTCCCATCTGGTAGCCTCT---CCGGGTTG 39783 |||| |||| ||| | || || |||||||| ||||| | | || | |||| | Sbjct 35881 GCTCAGTCATCAGCTTACCGGCCAGCCAGCGCCCCATTTTGACACCGGTGTCCCGGATAA 35822 Query 39784 CCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCGTGGCTG--ATGCCATGTAGCTCAAG 39841 | || | |||||||||| || ||||| ||||| ||| | ||| | ||| | Sbjct 35821 CGATGCTCGCGATGCTTCGGGCGCCGGCAGAACCTCCACTGGCGTTCCAGG--CCTCCAT 35764 Query 39842 TACCTGACTGCG-TAATACAGCCCGTCTGCCGTCTGGTTTTTCAGGACG-GTTTTTCCAG 39899 ||||| ||||| | | || | || |||||||| | | || || | |||| Sbjct 35763 GACCTGGCTGCGTTTAGTCA-CGCGCTCCCCGTCTGG-CTCACTGGCCGAAGCCTGCCAG 35706 Query 39900 TATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAGAGTGTGACCATAGGATAATGC 39959 | ||||||||||||||||| ||| || |||| || || | || || || Sbjct 35705 TGCCTGTAGCTGCTGCGATGTACCTTAAAGGTCAGGCACAGGGTCGTAACCGGGTATCGC 35646 Query 39960 GCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAG 40019 || || || | ||| |||| |||| ||| || ||||| ||||| |||||||| |||| Sbjct 35645 GCCCTCAGCCTGTCGACTATCATGAACCGTTGAGTGAGTCCGACATTAAGAGCGCCGTAG 35586 Query 40020 CCTTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGA 40079 |||||||||||||||| || |||||||||| |||||||| |||||| | | |||||| | Sbjct 35585 CCTTTTTTAATATTTCGTTTTCCATTTCAAGGCGTTGTATTTTTTTCTTCATCTCACGCA 35526 Query 40080 TTTCAATTTGTTCCGGGGTAATGGGGGAG-GCTTTTGGTGTTTTGCCCTGACGCTCATCA 40138 |||| || || ||||| | | || || | || ||||| || || ||||| Sbjct 35525 GCTCAAGCTGCTCAGGGGTGA-GAGGAAGCCCCGCAGGGGTTTTACCTTGTCGCTCCAGC 35467 Query 40139 CGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCA 40198 | |||| |||||||| | |||| | |||| ||| |||| | |||| |||||| Sbjct 35466 CTGAGTTTATTGACCCAGCGAGTCAGAGCGGAATGGCTGACATTAACCGCTTCGGCGGCC 35407 Query 40199 TCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCG 40258 | | | ||||| ||||| |||||||||| || | |||| | ||||| || || Sbjct 35406 TTAACAAATGTGTAGCCGTGGTCGACAACCAGTTTTGCAGCTTCGAGCTTAAATTCAGCC 35347 Query 40259 CTAAAATTTCtttttttCATTGGAGCACCTGTGTTGTTCT-GAGGTGAGCATATCACCTC 40317 | |||| ||| |||| || ||||||| |||| | ||||||||||||||||||| Sbjct 35346 GTGAAAT---GTTTAGCCATTTGATCACCTGTCGTGTTGTGGAGGTGAGCATATCACCTC 35290 Query 40318 TGTTCAGGTGGCCAAATTCAGTGTGCCACTTCAA 40351 | ||||||||||| ||||||||||||| ||| Sbjct 35289 CGATCAGGTGGCCAGTATCAGTGTGCCACTACAA 35256 Score = 98.7 bits (108), Expect = 3e-16 Identities = 104/135 (77%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 40217 TGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATTTCtttttttC 40276 ||||| |||||||||| || | |||| | ||||| || || | |||| | || | Sbjct 17482 TGGTCGACAACCAGTTTTGCAGCTTCGAGCTTAAATTCAGCCGTGAAATGT---TTAGCC 17426 Query 40277 ATTGGAGCACCTGTGTTGTTCTG-AGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATT 40335 ||| || ||||||| |||| || |||||||||||||||||| | ||||||||||| | Sbjct 17425 ATTTGATCACCTGTCGTGTTGTGGAGGTGAGCATATCACCTCCGATCAGGTGGCCAGTAT 17366 Query 40336 CAGTGTGCCACTTCA 40350 |||||||||||| || Sbjct 17365 CAGTGTGCCACTACA 17351 >seq137 Length=3436 Score = 98.7 bits (108), Expect = 3e-16 Identities = 61/64 (95%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 24835 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATAAG 24894 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || Sbjct 42 ATTCGTAATGCGAAGGTCGTAGGTTCGATTCCTATTATCGGCACCA-TTAAATCAATGAG 100 Query 24895 TTAC 24898 |||| Sbjct 101 TTAC 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132594531193058