Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1838 102 1e-15 seq3 98.7 1e-14 seq27 96.9 4e-14 seq10 96.9 4e-14 seq8 93.3 5e-13 seq11 87.8 2e-11 >seq1838 Length=280 Score = 102 bits (112), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||| | |||||| ||||||||||| || | || Sbjct 26 GCTTGGCCAGCTCACCGGGAAGCAGCAGCCTCACGGCCGTCTGGATCTCCCGGGACGTGA 85 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||| || ||||| ||||||| | |||| || |||| | Sbjct 86 TGGTCGAGCGTTTGTTGTAGTGAGCGAGACGCGAAGCCTCGGCGGCGATACGCTCGAAGA 145 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||| | ||| | ||| | || | || ||| |||| Sbjct 146 TGTCGTTCACGAAGCTGTTCATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGT 205 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||||||||| Sbjct 206 GTACCTGCTTCAGCACCTTGTAGATG 231 >seq3 Length=17417032 Score = 98.7 bits (108), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 869181 CTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCT 869240 ||||||| || |||| ||| || || || | || || ||||| || || | ||| | Sbjct 7878544 CTTCGTCCCGCGAAATCAGTTCATTACTGAATGTCAGTCCAGGCATTAGTCCTCTCTTTT 7878485 Query 869241 TGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGC 869300 | ||||| || ||||| ||||||||| ||| ||||| |||||||| || |||||| Sbjct 7878484 TCAGCCAGAATATGGCAGCGAAACTGCCACTGAAGAAGATTCCCTCGACCGCAGCAAAGG 7878425 Query 869301 CGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGT 869360 | || | ||||||||||| || | | ||| | ||| ||||| |||| ||||| | Sbjct 7878424 CAATTACGCGCTCGGCAAACGTAGC---ACTCTCGTGGTTAATCCAGTTCAAAGCCCAAT 7878368 Query 869361 CGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 || ||||| || | |||| || ||||||||| Sbjct 7878367 TAGCTTTTTTAGCTACGCAGGGCAGTGTTTCGATGGCG 7878330 >seq27 Length=2371257 Score = 96.9 bits (106), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||| | |||||| |||||||| || || | || Sbjct 2368835 GCTTGGCCAGCTCACCGGGAAGCAGCAGCCTCACGGCCGTCTGGATTTCCCGGGACGTGA 2368776 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| | || || ||||| ||||||| | ||||||| |||| | Sbjct 2368775 TGGTCGAGCGTTTGTTGTAATGAGCGAGACGCGAAGCCTCGGCGGCGATGCGCTCGAAGA 2368716 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||| | ||| | ||| | || | || ||| |||| Sbjct 2368715 TGTCGTTCACGAAGCTGTTCATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGT 2368656 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||||||||| Sbjct 2368655 GTACCTGCTTCAGCACCTTGTAGATG 2368630 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||| | |||||| |||||||| || || | || Sbjct 2361391 GCTTGGCCAGCTCACCGGGAAGCAGCAGCCTCACGGCCGTCTGGATTTCCCGGGACGTGA 2361332 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| | || || ||||| ||||||| | || |||| |||| | Sbjct 2361331 TGGTCGAGCGTTTGTTGTAATGAGCGAGACGCGAAGCCTCGGCGGCGGTGCGCTCGAAGA 2361272 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||| | ||| | ||| | || | || ||| |||| Sbjct 2361271 TGTCGTTCACGAAGCTGTTCATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGT 2361212 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||||||||| Sbjct 2361211 GTACCTGCTTCAGCACCTTGTAGATG 2361186 >seq10 Length=9558897 Score = 96.9 bits (106), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||| | |||||| ||||||||||| || | || Sbjct 648889 GCTTGGCCAGCTCACCGGGAAGCAGCAGCCTCACGGCCGTCTGGATCTCCCGGGACGTGA 648948 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| | || || ||||| ||||||| | |||| || |||| | Sbjct 648949 TGGTCGAGCGTTTGTTGTAATGAGCGAGACGCGAAGCCTCGGCGGCGATACGCTCGAAGA 649008 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||| | ||| | ||| | || | || ||| |||| Sbjct 649009 TGTCGTTCACGAAGCTGTTCATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGT 649068 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||||||||| Sbjct 649069 GTACCTGCTTCAGCACCTTGTAGATG 649094 Score = 96.9 bits (106), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||| | |||||| ||||||||||| || | || Sbjct 2202401 GCTTGGCCAGCTCACCGGGAAGCAGCAGCCTCACGGCCGTCTGGATCTCCCGGGACGTGA 2202460 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| | || || ||||| ||||||| | |||| || |||| | Sbjct 2202461 TGGTCGAGCGTTTGTTGTAATGAGCGAGACGCGAAGCCTCGGCGGCGATACGCTCGAAGA 2202520 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||| | ||| | ||| | || | || ||| |||| Sbjct 2202521 TGTCGTTCACGAAGCTGTTCATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGT 2202580 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||||||||| Sbjct 2202581 GTACCTGCTTCAGCACCTTGTAGATG 2202606 Score = 96.9 bits (106), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||| | |||||| ||||||||||| || | || Sbjct 2211734 GCTTGGCCAGCTCACCGGGAAGCAGCAGCCTCACGGCCGTCTGGATCTCCCGGGACGTGA 2211675 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| | || || ||||| ||||||| | |||| || |||| | Sbjct 2211674 TGGTCGAGCGTTTGTTGTAATGAGCGAGACGCGAAGCCTCGGCGGCGATACGCTCGAAGA 2211615 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||| | ||| | ||| | || | || ||| |||| Sbjct 2211614 TGTCGTTCACGAAGCTGTTCATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGT 2211555 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||||||||| Sbjct 2211554 GTACCTGCTTCAGCACCTTGTAGATG 2211529 >seq8 Length=10932247 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||| | |||||| |||||||| || || | || Sbjct 2453 GCTTGGCCAGCTCACCGGGAAGCAGCAGCCTCACGGCCGTCTGGATTTCCCGGGACGTGA 2394 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| | || || ||||| ||||||| | || |||| |||| | Sbjct 2393 TGGTCGAGCGTTTGTTGTAATGAGCGAGACGCGAAGCCTCGGCGGCGGTGCGCTCGAAGA 2334 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||| | ||| | ||| | || | || ||| |||| Sbjct 2333 TGTCGTTCACGAAGCTGTTCATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGT 2274 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||||||||| Sbjct 2273 GTACCTGCTTCAGCACCTTGTAGATG 2248 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||| | |||||| |||||||| || || | || Sbjct 581830 GCTTGGCCAGCTCACCGGGAAGCAGCAGCCTCACGGCCGTCTGGATTTCCCGGGACGTGA 581771 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| | || || ||||| ||||||| | || |||| |||| | Sbjct 581770 TGGTCGAGCGTTTGTTGTAATGAGCGAGACGCGAAGCCTCGGCGGCGGTGCGCTCGAAGA 581711 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||| | ||| | ||| | || | || ||| |||| Sbjct 581710 TGTCGTTCACGAAGCTGTTCATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGT 581651 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||||||||| Sbjct 581650 GTACCTGCTTCAGCACCTTGTAGATG 581625 >seq11 Length=9115147 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | || | |||||| ||||||||||| || | | Sbjct 6454221 GCTTGGCCAGCTCACCGGGTAGCAGGAGCCTCACGGCTGTCTGGATCTCCCGGGACGTAA 6454162 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||| || ||||| || |||| | ||||||| |||| | Sbjct 6454161 TGGTCGAGCGTTTGTTGTAGTGAGCGAGACGCGAAGCTTCGGCGGCGATGCGCTCGAAAA 6454102 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||| | ||| | ||| | || | || ||| |||| Sbjct 6454101 TGTCGTTCACGAAGCTGTTCATTATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGT 6454042 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| | ||||||||||||| Sbjct 6454041 GAACCTGCTTCAACACCTTGTAGATG 6454016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106937567073869