Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq13 122 1e-22 >seq13 Length=8037603 Score = 122 bits (134), Expect = 1e-22 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 172410 TGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGG 172469 ||| |||| | ||| || ||| | | ||| || || |||| |||||| ||| ||||| Sbjct 7607439 TGGTTTATCAGAGGCTCCACTAACGCGAAAGAACTATCCGATAAAGGTGTCAAAATTTGG 7607498 Query 172470 AATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAAGGT 172529 ||| |||| ||| | | ||| | || | || || || | || ||| | ||||| Sbjct 7607499 GATGCCAATGCATCTAGAAAGTTTCTCGACTCATTGGGTTTCATCGATAGAGACGAAGGA 7607558 Query 172530 GATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGAC-TG 172588 ||||||||||| |||||||| ||||||||||||||| || || |||| |||||| || Sbjct 7607559 GATTTAGGCCCGATTTATGGCTTTCAATGGAGACATTATGGTGCAAAATACATCGACATG 7607618 Query 172589 TGATACAGATTACACAGGACAAGG 172612 | |||||||||| ||||| ||||| Sbjct 7607619 T-ATACAGATTATACAGGCCAAGG 7607641 Score = 118 bits (130), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 172410 TGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGG 172469 ||| | |||| ||||||||| || ||||| ||||| ||| | || ||| | ||||| Sbjct 7580794 TGGTTCATTAGAGGTTCAACAAATGCAAAAGAATTATCTGAAAAAGATGTACACATTTGG 7580735 Query 172470 AATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAAGGT 172529 ||| |||| |||| ||||||||||| |||||||| || || || || |||| || Sbjct 7580734 GATGCTAATAGTTCACGTGAATTTTTGGATTTATGTAAATTCACCGATCGAGAAGAGGGA 7580675 Query 172530 GATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATAT 172582 ||||||||||| | ||||| |||||||||||||| || || ||||||| Sbjct 7580674 GATTTAGGCCCTGTGTATGGCTTTCAATGGAGACACTTTGGAGCAAAATATAT 7580622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632470174663160