Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 143 2e-29 seq34 114 1e-20 seq8 100 3e-16 >seq2 Length=17806784 Score = 143 bits (158), Expect = 2e-29 Identities = 160/210 (76%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || ||||||| | || |||||||||||||| || || ||||| || | Sbjct 3491840 GATGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAGGTAGAGGCATC 3491899 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || || | |||| | ||| ||||| || ||||||||||| || || |||| Sbjct 3491900 AGACACCATTGAGAATGTTAAAGCCAAA-ATCCAGGATAAAGAAGGAATTCCCCCAGATC 3491958 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | |||||| | |||||||| || ||||| | || ||| |||| | |||||||| | Sbjct 3491959 AGCAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTTTCAGATTACA 3492018 Query 24882 ACATTCAAAAGGAATCGACACTACA-CTTG 24910 | |||||||||||||| ||| | || |||| Sbjct 3492019 ATATTCAAAAGGAATCAACATTGCATCTTG 3492048 Score = 143 bits (158), Expect = 2e-29 Identities = 160/210 (76%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || ||||||| | || |||||||||||||| || || ||||| || | Sbjct 3492955 GATGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAGGTAGAGGCATC 3493014 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || || | |||| | ||| ||||| || ||||||||||| || || |||| Sbjct 3493015 AGACACCATTGAGAATGTTAAAGCCAAA-ATCCAGGATAAAGAAGGAATTCCCCCAGATC 3493073 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | |||||| | |||||||| || ||||| | || ||| |||| | |||||||| | Sbjct 3493074 AGCAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTTTCAGATTACA 3493133 Query 24882 ACATTCAAAAGGAATCGACACTACA-CTTG 24910 | |||||||||||||| ||| | || |||| Sbjct 3493134 ATATTCAAAAGGAATCAACATTGCATCTTG 3493163 Score = 138 bits (152), Expect = 1e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | || |||||||||||||| || ||||| ||||| || Sbjct 3493184 ATGCAAATTTTTGTCAAAACATTGACAGGTAAAACTATTACACTGGAAGTTGAAGCTTCC 3493243 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || ||||| ||||||||||| || || ||||| Sbjct 3493244 GATACTATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 3493303 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || |||||||| ||||| |||| ||| |||| | || || |||||| Sbjct 3493304 CAACGTCTCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAACATTATCCGACTATAAC 3493363 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || ||||| ||||| || || || |||| Sbjct 3493364 ATCCAAAAAGAATCAACGCTCCATCTTG 3493391 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| |||| || ||||| || ||| | ||||| ||||| | Sbjct 3492069 ATGCAAATTTTTGTTAAAACCTTAACTGGCAAAACCATCACGTTGGAAGTTGAAGCTTCT 3492128 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||||||||||||||||||||| || || |||||| Sbjct 3492129 GATACTATTGAAAATGTTAAAGCGAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAA 3492188 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 |||||| | || |||||||| ||||| |||| ||| Sbjct 3492189 CAACGTCTCATTTTTGCCGGTAAACAATTGGAAGAT 3492224 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || |||| || ||||| ||||| || ||||| ||||| | Sbjct 12207405 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207346 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| || || ||||| || ||||||||||| || || || || || Sbjct 12207345 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207286 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || || || |||||||| | | |||| || || || Sbjct 12207285 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207226 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| ||||| || | |||||| Sbjct 12207225 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGGC 12207178 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || |||| || ||||| ||||| || ||||| ||||| | Sbjct 12207861 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207802 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| || || ||||| || ||||||||||| || || || || || Sbjct 12207801 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207742 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || || || |||||||| | | |||| || || || Sbjct 12207741 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207682 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| ||||| || | |||||| Sbjct 12207681 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGGC 12207634 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || ||||| || ||||| ||||| | Sbjct 12209229 ATGCAGATCTTTGTAAAGACATTGACTGGGAAGACAATTACTCTTGAAGTCGAAGCTTCA 12209170 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| || || |||||||| ||||||||||| || || || || || Sbjct 12209169 GACACAATAGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 12209110 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || || || |||||||| | | |||| || || || Sbjct 12209109 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12209050 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| || || || | |||||| Sbjct 12209049 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12209002 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || |||| || ||||| ||||| || ||||| ||||| | Sbjct 12207633 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207574 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| || || ||||| || ||||||||||| || || || || || Sbjct 12207573 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207514 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || || || |||||||| | | |||| || || || Sbjct 12207513 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207454 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| || || || | |||||| Sbjct 12207453 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12207406 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || |||| || ||||| ||||| || ||||| ||||| | Sbjct 12208089 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208030 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| || || ||||| || ||||||||||| || || || || || Sbjct 12208029 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207970 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || || || |||||||| | | |||| || || || Sbjct 12207969 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207910 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| || || || | |||||| Sbjct 12207909 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12207862 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || |||| || ||||| ||||| || ||||| ||||| | Sbjct 12208317 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208258 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| || || ||||| || ||||||||||| || || || || || Sbjct 12208257 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208198 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || || || |||||||| | | |||| || || || Sbjct 12208197 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208138 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| || || || | |||||| Sbjct 12208137 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12208090 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || |||| || ||||| ||||| || ||||| ||||| | Sbjct 12208545 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208486 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| || || ||||| || ||||||||||| || || || || || Sbjct 12208485 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208426 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || || || |||||||| | | |||| || || || Sbjct 12208425 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208366 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| || || || | |||||| Sbjct 12208365 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12208318 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || |||| || ||||| ||||| || ||||| ||||| | Sbjct 12208773 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208714 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| || || ||||| || ||||||||||| || || || || || Sbjct 12208713 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208654 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || || || |||||||| | | |||| || || || Sbjct 12208653 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208594 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| || || || | |||||| Sbjct 12208593 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12208546 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || |||| || ||||| ||||| || ||||| ||||| | Sbjct 12209001 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208942 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| || || ||||| || ||||||||||| || || || || || Sbjct 12208941 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208882 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || || || |||||||| | | |||| || || || Sbjct 12208881 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208822 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| || || || | |||||| Sbjct 12208821 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12208774 >seq34 Length=1613596 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| ||||| ||||||| |||| || || |||||||| || ||||||||||| Sbjct 773134 ACAATGCAAATCTTCGTTAAAACTTTAACAGGGAAGACTATTACCCTAGAAGTAGAAGCA 773075 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | |||| || ||| ||||| ||||| |||||||| || ||||| ||| Sbjct 773074 TCAGATACGATTGAAAATGTGAAAGCTAAGATACAAGATAAAGAAGGCATCCCTCCAGAT 773015 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 |||||| | || || ||||| || ||||| || || || | | | || || ||| Sbjct 773014 CAACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGACGGTCGTACTTTATCTGACTAT 772955 Query 24881 AACATTCAAAA 24891 || |||||||| Sbjct 772954 AATATTCAAAA 772944 >seq8 Length=10932247 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 139063 ACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTG 139122 ||||| | || ||| || || |||| || |||||||||||||| || || Sbjct 3799444 ACAAACATATTAACAGCGATAGATGCTAAATTACACACCGCCACTTCATCTGGAGAAGAA 3799385 Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 |||| |||| ||||| ||| | |||||||| |||| ||||| | ||| | |||||| Sbjct 3799384 TATTGCACAACTTCGGTACATAGATTACTACTTCTGATGGTACCAAGATTCTTTTGATTT 3799325 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 || | ||||||| |||||| |||||||| || || || |||||||| ||||| | | Sbjct 3799324 GACTTCCTGTTACAATGATCTTTATAAAGCATGTAAGGAGTACCAGTTTCAACTTGCGAC 3799265 Query 139243 TCTATAAT 139250 | || ||| Sbjct 3799264 TTTAAAAT 3799257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449883782519960