Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3 201 9e-47 seq2 102 7e-17 >seq3 Length=17417032 Score = 201 bits (222), Expect = 9e-47 Identities = 222/296 (75%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || || || || || |||||||| | |||||||| ||| | || | |||||| ||||| Sbjct 2427329 AGTTCGGTTTCGGGATTGTCACAGTACGGACACAGAACATATTTCCTGATGAAGCCATCC 2427388 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 | || || || | ||| | |||||| || ||||||||||||| |||||| || Sbjct 2427389 AAGAGATCTTGAAGTTTAGAAGCATCGTGGCTACCATTGACGATGAATCTTTCGTTCTTA 2427448 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCC 34494 |||||| |||||||||||||||| ||||| || ||| |||| ||||| ||| | || Sbjct 2427449 AAATCGAATTGCGTTTGCGCGCCCAATTCGCAACCAAAGAACTTCGTCGGATAAGTTGCT 2427508 Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 || ||||| | || || || | |||| |||||| |||||||| || |||||||||||| Sbjct 2427509 GGGCGTCCGATAGCTTTAGCAACTTCGACCATGTTAACGATGACGGTTTTGATGCCGTTG 2427568 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 || || || ||||| || || ||||| ||||||||||| || ||||| || || Sbjct 2427569 CCTTTACCCTCGACTTTCGCCTGAATGCGAGGCATTTTGTAACGATAGAAGGCATC 2427624 >seq2 Length=17806784 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||||||||| || || || ||||| ||||| | ||| || || Sbjct 3493183 AATGCAAATTTTTGTCAAAACATTGACAGGTAAAACTATTACACTGGAAGTTGAAGCTTC 3493242 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||||| | | | || ||| || ||| || |||||||| | || ||||| Sbjct 3493243 CGATACTATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 3493302 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || |||| ||| |||||||| |||| |||| |||||| | | || || || Sbjct 3493303 GCAACGTCTCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAACATTATCCGACTATAA 3493362 Query 110452 CATTCAAAAAGAATCTACG 110470 ||| ||||||||||| ||| Sbjct 3493363 CATCCAAAAAGAATCAACG 3493381 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| ||||| ||||| ||||||||||| || | ||| || || Sbjct 3492068 AATGCAAATTTTTGTTAAAACCTTAACTGGCAAAACCATCACGTTGGAAGTTGAAGCTTC 3492127 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| |||||| ||||||||||| | || ||||| Sbjct 3492128 TGATACTATTGAAAATGTTAAAGCGAAGATCCAAGACAAAGAAGGAATTCCACCAGATCA 3492187 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAA 110438 |||| | || |||| ||| |||||||| |||| |||| ||||||| Sbjct 3492188 ACAACGTCTCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAACAA 3492234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412829237587301