Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq10 140 5e-27 seq27 136 6e-26 seq8 131 3e-24 seq11 122 1e-21 seq1838 120 5e-21 seq3 98.7 2e-14 >seq10 Length=9558897 Score = 140 bits (154), Expect = 5e-27 Identities = 178/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| ||||| ||||| |||||||||| ||||||| || ||| | | Sbjct 648850 TGTACTTGGTGACGGCTTTGGTGCCCTCGCTGACGGCGTGCTTGGCCAGCTCACCGGGAA 648909 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | ||| | |||||| ||||||||||| |||| ||| || ||| |||| || | Sbjct 648910 GCAGCAGCCTCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGTTTGTTGTAAT 648969 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||||| | |||| || |||| |||||||| || || ||| Sbjct 648970 GAGCG--AGACGCGAAGCCTCGGCGGCGATACGCTCGAAGATGTCGTTCACGAAGCTGTT 649027 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| || ||| | |||| | || | || ||| ||||| |||||||| |||||||| Sbjct 649028 CATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGTGTACCTGCTTCAGCACCTT 649087 Query 1485708 GTA 1485710 ||| Sbjct 649088 GTA 649090 Score = 140 bits (154), Expect = 5e-27 Identities = 178/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| ||||| ||||| |||||||||| ||||||| || ||| | | Sbjct 2202362 TGTACTTGGTGACGGCTTTGGTGCCCTCGCTGACGGCGTGCTTGGCCAGCTCACCGGGAA 2202421 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | ||| | |||||| ||||||||||| |||| ||| || ||| |||| || | Sbjct 2202422 GCAGCAGCCTCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGTTTGTTGTAAT 2202481 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||||| | |||| || |||| |||||||| || || ||| Sbjct 2202482 GAGCG--AGACGCGAAGCCTCGGCGGCGATACGCTCGAAGATGTCGTTCACGAAGCTGTT 2202539 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| || ||| | |||| | || | || ||| ||||| |||||||| |||||||| Sbjct 2202540 CATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGTGTACCTGCTTCAGCACCTT 2202599 Query 1485708 GTA 1485710 ||| Sbjct 2202600 GTA 2202602 Score = 140 bits (154), Expect = 5e-27 Identities = 178/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| ||||| ||||| |||||||||| ||||||| || ||| | | Sbjct 2211773 TGTACTTGGTGACGGCTTTGGTGCCCTCGCTGACGGCGTGCTTGGCCAGCTCACCGGGAA 2211714 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | ||| | |||||| ||||||||||| |||| ||| || ||| |||| || | Sbjct 2211713 GCAGCAGCCTCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGTTTGTTGTAAT 2211654 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||||| | |||| || |||| |||||||| || || ||| Sbjct 2211653 GAGCG--AGACGCGAAGCCTCGGCGGCGATACGCTCGAAGATGTCGTTCACGAAGCTGTT 2211596 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| || ||| | |||| | || | || ||| ||||| |||||||| |||||||| Sbjct 2211595 CATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGTGTACCTGCTTCAGCACCTT 2211536 Query 1485708 GTA 1485710 ||| Sbjct 2211535 GTA 2211533 >seq27 Length=2371257 Score = 136 bits (150), Expect = 6e-26 Identities = 177/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| |||||||||| ||||||| || ||| | | Sbjct 2368874 TGTACTTGGTGACAGCTTTGGTGCCCTCGCTGACGGCGTGCTTGGCCAGCTCACCGGGAA 2368815 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | ||| | |||||| |||||||| || |||| ||| || ||| |||| || | Sbjct 2368814 GCAGCAGCCTCACGGCCGTCTGGATTTCCCGGGACGTGATGGTCGAGCGTTTGTTGTAAT 2368755 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||||| | ||||||| |||| |||||||| || || ||| Sbjct 2368754 GAGCG--AGACGCGAAGCCTCGGCGGCGATGCGCTCGAAGATGTCGTTCACGAAGCTGTT 2368697 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| || ||| | |||| | || | || ||| ||||| |||||||| |||||||| Sbjct 2368696 CATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGTGTACCTGCTTCAGCACCTT 2368637 Query 1485708 GTA 1485710 ||| Sbjct 2368636 GTA 2368634 Score = 131 bits (144), Expect = 3e-24 Identities = 176/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| |||||||||| ||||||| || ||| | | Sbjct 2361430 TGTACTTGGTGACAGCTTTGGTGCCCTCGCTGACGGCGTGCTTGGCCAGCTCACCGGGAA 2361371 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | ||| | |||||| |||||||| || |||| ||| || ||| |||| || | Sbjct 2361370 GCAGCAGCCTCACGGCCGTCTGGATTTCCCGGGACGTGATGGTCGAGCGTTTGTTGTAAT 2361311 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||||| | || |||| |||| |||||||| || || ||| Sbjct 2361310 GAGCG--AGACGCGAAGCCTCGGCGGCGGTGCGCTCGAAGATGTCGTTCACGAAGCTGTT 2361253 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| || ||| | |||| | || | || ||| ||||| |||||||| |||||||| Sbjct 2361252 CATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGTGTACCTGCTTCAGCACCTT 2361193 Query 1485708 GTA 1485710 ||| Sbjct 2361192 GTA 2361190 >seq8 Length=10932247 Score = 131 bits (144), Expect = 3e-24 Identities = 176/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| |||||||||| ||||||| || ||| | | Sbjct 581869 TGTACTTGGTGACAGCTTTGGTGCCCTCGCTGACGGCGTGCTTGGCCAGCTCACCGGGAA 581810 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | ||| | |||||| |||||||| || |||| ||| || ||| |||| || | Sbjct 581809 GCAGCAGCCTCACGGCCGTCTGGATTTCCCGGGACGTGATGGTCGAGCGTTTGTTGTAAT 581750 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||||| | || |||| |||| |||||||| || || ||| Sbjct 581749 GAGCG--AGACGCGAAGCCTCGGCGGCGGTGCGCTCGAAGATGTCGTTCACGAAGCTGTT 581692 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| || ||| | |||| | || | || ||| ||||| |||||||| |||||||| Sbjct 581691 CATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGTGTACCTGCTTCAGCACCTT 581632 Query 1485708 GTA 1485710 ||| Sbjct 581631 GTA 581629 Score = 129 bits (142), Expect = 9e-24 Identities = 175/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| || ||||| ||||| |||||||||| ||||||| || ||| | | Sbjct 2491 GTACTTGGTGACAGCTTTGGTGCCCTCGCTGACGGCGTGCTTGGCCAGCTCACCGGGAAG 2432 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGTG 1485588 | ||| | |||||| |||||||| || |||| ||| || ||| |||| || || Sbjct 2431 CAGCAGCCTCACGGCCGTCTGGATTTCCCGGGACGTGATGGTCGAGCGTTTGTTGTAATG 2372 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||| || || ||||||| | || |||| |||| |||||||| || || |||| Sbjct 2371 AGCG--AGACGCGAAGCCTCGGCGGCGGTGCGCTCGAAGATGTCGTTCACGAAGCTGTTC 2314 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || || ||| | |||| | || | || ||| ||||| |||||||| ||||||||| Sbjct 2313 ATAATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGTGTACCTGCTTCAGCACCTTG 2254 Query 1485709 TA 1485710 || Sbjct 2253 TA 2252 >seq11 Length=9115147 Score = 122 bits (134), Expect = 1e-21 Identities = 174/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| || || || || |||||||||| ||||||| || ||| | | Sbjct 6454260 TGTACTTGGTGACGGCTTTAGTGCCTTCGCTGACGGCGTGCTTGGCCAGCTCACCGGGTA 6454201 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | || | |||||| ||||||||||| |||| || || ||| |||| |||| Sbjct 6454200 GCAGGAGCCTCACGGCTGTCTGGATCTCCCGGGACGTAATGGTCGAGCGTTTGTTGTAGT 6454141 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || || |||| | ||||||| |||| |||||||| || || ||| Sbjct 6454140 GAGCG--AGACGCGAAGCTTCGGCGGCGATGCGCTCGAAAATGTCGTTCACGAAGCTGTT 6454083 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| || ||| | |||| | || | || ||| ||||| |||||||| | |||||| Sbjct 6454082 CATTATGCTCATGGCTTTGCTCGACACACCAGTGTCCGGGTGAACCTGCTTCAACACCTT 6454023 Query 1485708 GTA 1485710 ||| Sbjct 6454022 GTA 6454020 >seq1838 Length=280 Score = 120 bits (132), Expect = 5e-21 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 1485484 GCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACG 1485543 || ||||| ||||| |||||||||| ||||||| || ||| | | | ||| | |||| Sbjct 1 GCTTTGGTGCCCTCGCTGACGGCGTGCTTGGCCAGCTCACCGGGAAGCAGCAGCCTCACG 60 Query 1485544 GCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGTGCGCGCCAGGCGGC 1485601 || ||||||||||| |||| ||| || ||| |||| ||||| ||| || || Sbjct 61 GCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGTTTGTTGTAGTGAGCG--AGACGCG 118 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||| | |||| || |||| |||||||| || || |||||| || ||| | Sbjct 119 AAGCCTCGGCGGCGATACGCTCGAAGATGTCGTTCACGAAGCTGTTCATAATGCTCATGG 178 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 |||| | || | || ||| ||||| |||||||| ||||||||||| Sbjct 179 CTTTGCTCGACACACCAGTGTCCGGGTGTACCTGCTTCAGCACCTTGTA 227 >seq3 Length=17417032 Score = 98.7 bits (108), Expect = 2e-14 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 794342 CTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCT 794401 ||||||| || |||| ||| || || || || || ||||| || || | ||| | Sbjct 7878544 CTTCGTCCCGCGAAATCAGTTCATTACTGAATGTCAGTCCAGGCATTAGTCCTCTCTTTT 7878485 Query 794402 TGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGC 794461 | ||||| || |||||| ||||||||| ||| ||||| |||||||| || |||||| Sbjct 7878484 TCAGCCAGAATATGGCAGCGAAACTGCCACTGAAGAAGATTCCCTCGACCGCAGCAAAGG 7878425 Query 794462 CGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACT 794521 | | | ||||||||||| || | | ||| | ||| ||||| |||| ||||| | Sbjct 7878424 CAATTACGCGCTCGGCAAACGTAGC---ACTCTCGTGGTTAATCCAGTTCAAAGCCCAAT 7878368 Query 794522 CTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 || ||||| || |||||| || ||||||||| Sbjct 7878367 TAGCTTTTTTAGCTACGCAGGGCAGTGTTTCGATGGCG 7878330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915985037703623