Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq64 82.4 2e-11 seq497 80.6 6e-11 >seq64 Length=39090 Score = 82.4 bits (90), Expect = 2e-11 Identities = 170/247 (69%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 26217 GATGAAATAGGCTATCTGCCGATGAACAGAGAGGAAGCCAGTCTGTTCTTCCGGCTACTG 26276 ||||||||||| ||||||||| | | | |||||||| | |||||||||| | | | Sbjct 8730 GATGAAATAGGTTATCTGCCGTTCAGCCAGGAGGAAGCGAAGCTGTTCTTCCAGGTCATA 8789 Query 26277 AACCGTCGATATGA-AAAAGCGAGCATCATACTGACGTCAAACAAAGGGTTCGCAGACTG 26335 | || || || || |||| | || ||||||||||| ||| ||||| | | || Sbjct 8790 GCCAAACGTTACGAGAAGAGCGCG-ATGATACTGACGTCGAACCTGCCGTTCGGACAATG 8848 Query 26336 GGGAGAAATGTTC---GGAGATCACGTACTGGCAACAGCGATCCTGGATCGGCTGCTACA 26392 || | | |||| |||||| | || || |||| || ||||||||| | |||| Sbjct 8849 GGACCAGACGTTCGCAGGAGATGCAGCCCTTACATCAGCAATGCTGGATCGGATCTTACA 8908 Query 26393 TCACTCA-ACCACGCTGAATATCAAAGGAGAGAGTTACCGGTTAAAAGAGAAACGTAAAG 26451 ||| ||| || || | | || ||||||||||| || || | || | ||||| |||| Sbjct 8909 TCATTCACACGTCG-TACAAATAAAAGGAGAGAGCTATCGACTGAAGCAAAAACGGAAAG 8967 Query 26452 CTGGAGT 26458 | || || Sbjct 8968 CCGGGGT 8974 >seq497 Length=1180 Score = 80.6 bits (88), Expect = 6e-11 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 22691 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGtttttttt 22734 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTT 750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107484863836060