Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq2 172 9e-38 seq34 147 3e-30 >seq2 Length=17806784 Score = 172 bits (190), Expect = 9e-38 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||||| ||||| ||||| ||||| | || || ||| | || Sbjct 3493185 TGCAAATTTTTGTCAAAACATTGACAGGTAAAACTATTACACTGGAAGTTGAAGCTTCCG 3493244 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| ||||||||| |||||||| ||||| | Sbjct 3493245 ATACTATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGC 3493304 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||||||||| ||||||||||| || ||| ||||| ||| | || ||||| | Sbjct 3493305 AACGTCTCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAACATTATCCGACTATAACA 3493364 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||||||||| || ||||| Sbjct 3493365 TCCAAAAAGAATCAACGCTCCAT 3493387 Score = 136 bits (150), Expect = 6e-27 Identities = 150/197 (76%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | ||||| || || || ||||| |||||| |||| ||||| ||| | Sbjct 3491842 TGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAGGTAGAGGCATCA- 3491900 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| ||| ||||| || ||||||||| ||||| || ||||| Sbjct 3491901 GACACCATTGAGAATGTTAAAGCCAAAATCCAGGATAAAGAAGGAATTCCCCCAGATCAG 3491960 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | || || ||||| |||||||||||||| ||| |||||| | ||||||| ||| Sbjct 3491961 CAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTTTCAGATTACAAT 3492020 Query 146211 ATACAAAAAGAATCGAC 146227 || ||||| ||||| || Sbjct 3492021 ATTCAAAAGGAATCAAC 3492037 Score = 136 bits (150), Expect = 6e-27 Identities = 150/197 (76%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | ||||| || || || ||||| |||||| |||| ||||| ||| | Sbjct 3492957 TGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAGGTAGAGGCATCA- 3493015 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| ||| ||||| || ||||||||| ||||| || ||||| Sbjct 3493016 GACACCATTGAGAATGTTAAAGCCAAAATCCAGGATAAAGAAGGAATTCCCCCAGATCAG 3493075 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | || || ||||| |||||||||||||| ||| |||||| | ||||||| ||| Sbjct 3493076 CAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTTTCAGATTACAAT 3493135 Query 146211 ATACAAAAAGAATCGAC 146227 || ||||| ||||| || Sbjct 3493136 ATTCAAAAGGAATCAAC 3493152 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||| || ||||| || || | || || ||| | | Sbjct 3492070 TGCAAATTTTTGTTAAAACCTTAACTGGCAAAACCATCACGTTGGAAGTTGAAGCTTCTG 3492129 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| || || ||| |||||||| |||||||| ||||||| Sbjct 3492130 ATACTATTGAAAATGTTAAAGCGAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAAC 3492189 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAAC 146194 || | ||||||||||| ||||||||||| || ||| ||||| Sbjct 3492190 AACGTCTCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAAC 3492232 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||||||||| |||||||||||| |||| || ||| | | Sbjct 12207176 TGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCGG 12207117 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||| || || ||||||||||||||| || || || | Sbjct 12207116 ACACAATAGAAAATGTCAAGGCTAAGATTCAGGATAAAGAAGGCATTCCCCCAGACCAGC 12207057 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || || ||||| || || ||| | || ||| | || ||| | || || |||| Sbjct 12207056 AGCGTCTGATCTTTGCTGGCAAGCAACTCGAGGATGGACGTACTTTATCTGACTACAATA 12206997 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| || || || | || ||||| | || || ||||| || Sbjct 12206996 TCCAAAAGGAGTCTACGCTTCACTTAGTGCTTCGTTTGAGAGGTGG 12206951 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||||||||| |||||||||||| |||| || ||| | | Sbjct 12207404 TGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCGG 12207345 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||| || || |||||||||||||| || || || | Sbjct 12207344 ACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAGC 12207285 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || ||||| ||||| || ||| | || | | || || |||| Sbjct 12207284 AGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAATA 12207225 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | ||||| || | ||| | |||||||| Sbjct 12207224 TCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGG 12207179 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||||||||| |||||||||||| |||| || ||| | | Sbjct 12207860 TGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCGG 12207801 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||| || || |||||||||||||| || || || | Sbjct 12207800 ACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAGC 12207741 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || ||||| ||||| || ||| | || | | || || |||| Sbjct 12207740 AGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAATA 12207681 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | ||||| || | ||| | |||||||| Sbjct 12207680 TCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGG 12207635 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||||||||| |||||||||||| |||| || ||| | | Sbjct 12207632 TGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCGG 12207573 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||| || || |||||||||||||| || || || | Sbjct 12207572 ACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAGC 12207513 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || ||||| ||||| || ||| | || | | || || |||| Sbjct 12207512 AGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAATA 12207453 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | ||||| || | || | |||||||| Sbjct 12207452 TCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12207407 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||||||||| |||||||||||| |||| || ||| | | Sbjct 12208088 TGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCGG 12208029 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||| || || |||||||||||||| || || || | Sbjct 12208028 ACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAGC 12207969 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || ||||| ||||| || ||| | || | | || || |||| Sbjct 12207968 AGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAATA 12207909 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | ||||| || | || | |||||||| Sbjct 12207908 TCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12207863 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||||||||| |||||||||||| |||| || ||| | | Sbjct 12208316 TGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCGG 12208257 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||| || || |||||||||||||| || || || | Sbjct 12208256 ACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAGC 12208197 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || ||||| ||||| || ||| | || | | || || |||| Sbjct 12208196 AGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAATA 12208137 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | ||||| || | || | |||||||| Sbjct 12208136 TCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208091 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||||||||| |||||||||||| |||| || ||| | | Sbjct 12208544 TGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCGG 12208485 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||| || || |||||||||||||| || || || | Sbjct 12208484 ACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAGC 12208425 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || ||||| ||||| || ||| | || | | || || |||| Sbjct 12208424 AGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAATA 12208365 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | ||||| || | || | |||||||| Sbjct 12208364 TCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208319 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||||||||| |||||||||||| |||| || ||| | | Sbjct 12208772 TGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCGG 12208713 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||| || || |||||||||||||| || || || | Sbjct 12208712 ACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAGC 12208653 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || ||||| ||||| || ||| | || | | || || |||| Sbjct 12208652 AGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAATA 12208593 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | ||||| || | || | |||||||| Sbjct 12208592 TCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208547 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||||||||| |||||||||||| |||| || ||| | | Sbjct 12209000 TGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCGG 12208941 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||| || || |||||||||||||| || || || | Sbjct 12208940 ACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAGC 12208881 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || ||||| ||||| || ||| | || | | || || |||| Sbjct 12208880 AGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAATA 12208821 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | ||||| || | || | |||||||| Sbjct 12208820 TCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12208775 Score = 93.3 bits (102), Expect = 7e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| ||||| || || || ||||||||| |||| || ||| | | Sbjct 12209228 TGCAGATCTTTGTAAAGACATTGACTGGGAAGACAATTACTCTTGAAGTCGAAGCTTCAG 12209169 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||| || || |||||||||||||| || || || | Sbjct 12209168 ACACAATAGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 12209109 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || ||||| || ||||| ||||| || ||| | || | | || || |||| Sbjct 12209108 AGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAATA 12209049 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | ||||| || | || | |||||||| Sbjct 12209048 TCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12209003 >seq34 Length=1613596 Score = 147 bits (162), Expect = 3e-30 Identities = 148/190 (78%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | ||||| |||||||| || || ||||| | || |||||| ||| | Sbjct 773130 TGCAAATCTTCGTTAAAACTTTAACAGGGAAGACTATTACCCTAGAAGTAGAAGCATCA- 773072 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| ||||||| ||| ||| |||||| |||||||||||| || || |||||| Sbjct 773071 GATACGATTGAAAATGTGAAAGCTAAGATACAAGATAAAGAAGGCATCCCTCCAGATCAA 773012 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | |||||||| || |||||| | || || | | || ||| | || |||||| Sbjct 773011 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGACGGTCGTACTTTATCTGACTATAAT 772952 Query 146211 ATACAAAAAG 146220 || ||||||| Sbjct 772951 ATTCAAAAAG 772942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786142254864440