Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq13 118 1e-21 seq16 87.8 2e-12 >seq13 Length=8037603 Score = 118 bits (130), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 168537 TGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGG 168596 ||| | || | ||||||||| || ||||| ||||| ||| | || ||| | ||||| Sbjct 7580794 TGGTTCATTAGAGGTTCAACAAATGCAAAAGAATTATCTGAAAAAGATGTACACATTTGG 7580735 Query 168597 AACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAAGGT 168656 | | |||| |||| ||||||||||| ||||||||| || ||||| || |||| || Sbjct 7580734 GATGCTAATAGTTCACGTGAATTTTTGGATTTATGTAAATTCACCGATCGAGAAGAGGGA 7580675 Query 168657 GATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATAT 168709 |||||||| || | ||||| |||||||||||||| ||||| ||||||| Sbjct 7580674 GATTTAGGCCCTGTGTATGGCTTTCAATGGAGACACTTTGGAGCAAAATATAT 7580622 Score = 113 bits (124), Expect = 6e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 168537 TGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGG 168596 ||| |||| | ||| || ||| | | ||| || || |||| |||||| ||| ||||| Sbjct 7607439 TGGTTTATCAGAGGCTCCACTAACGCGAAAGAACTATCCGATAAAGGTGTCAAAATTTGG 7607498 Query 168597 AACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAAGGT 168656 | | |||| ||| | | ||| | || | || ||||| | ||| ||| | ||||| Sbjct 7607499 GATGCCAATGCATCTAGAAAGTTTCTCGACTCATTGGGTTTCATCGATAGAGACGAAGGA 7607558 Query 168657 GATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGAC-TG 168715 |||||||| || |||||||| ||||||||||||||| || || |||| || ||| || Sbjct 7607559 GATTTAGGCCCGATTTATGGCTTTCAATGGAGACATTATGGTGCAAAATACATCGACATG 7607618 Query 168716 TGATACAGATTACACCGGACAAGG 168739 | |||||||||| || || ||||| Sbjct 7607619 T-ATACAGATTATACAGGCCAAGG 7607641 >seq16 Length=6357092 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 51856 AAAGACAATTGATGGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 51915 ||||||| | | ||||||||| || | || ||| | || ||||| ||||||||| Sbjct 160189 AAAGACATATTAGAGATGGTGATTTGGTCATTTTTAATCGTCAGCCAACTCTTCATAAAA 160130 Query 51916 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTG- 51974 |||| || | || ||| || ||| | |||||| |||||||| Sbjct 160129 TGAGTATGATGGGTCACAGGGTAAAAGTTTTACCTTGGAGTACATTTCGTATGAATTTAA 160070 Query 51975 GCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCT 52034 ||| | ||| | | ||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 160069 GCTGT-ACTTCACCTTATAATGCTGACTTTGATGGGGATGAGATGAATTTACATGTTCCT 160011 Query 52035 CAATCATATGGA 52046 || || |||||| Sbjct 160010 CAGTC-TATGGA 160000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635158092107960