Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq13 118 1e-21 seq16 96.9 4e-15 >seq13 Length=8037603 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171622 TGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGG 171681 ||| |||| | ||| || ||| | | ||| || || |||| |||||| ||| ||||| Sbjct 7607439 TGGTTTATCAGAGGCTCCACTAACGCGAAAGAACTATCCGATAAAGGTGTCAAAATTTGG 7607498 Query 171682 AATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAAGGT 171741 ||| |||| ||| | | ||| | || | || || || | || ||| | ||||| Sbjct 7607499 GATGCCAATGCATCTAGAAAGTTTCTCGACTCATTGGGTTTCATCGATAGAGACGAAGGA 7607558 Query 171742 GATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTGT 171801 |||||||| || |||||||| ||||||||||||||| || || |||| |||||| Sbjct 7607559 GATTTAGGCCCGATTTATGGCTTTCAATGGAGACATTATGGTGCAAAATACATCGACATG 7607618 Query 171802 TATACAGATTACACAGGACAAGG 171824 ||||||||||| ||||| ||||| Sbjct 7607619 TATACAGATTATACAGGCCAAGG 7607641 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 171622 TGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGG 171681 ||| | |||| ||||||||| || ||||| ||||| ||| | || ||| | ||||| Sbjct 7580794 TGGTTCATTAGAGGTTCAACAAATGCAAAAGAATTATCTGAAAAAGATGTACACATTTGG 7580735 Query 171682 AATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAAGGT 171741 ||| |||| |||| ||||||||||| |||||||| || || || || |||| || Sbjct 7580734 GATGCTAATAGTTCACGTGAATTTTTGGATTTATGTAAATTCACCGATCGAGAAGAGGGA 7580675 Query 171742 GATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATAT 171794 |||||||| || | ||||| |||||||||||||| || || ||||||| Sbjct 7580674 GATTTAGGCCCTGTGTATGGCTTTCAATGGAGACACTTTGGAGCAAAATATAT 7580622 >seq16 Length=6357092 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 50306 AAAGACAATTGATAGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAG 50365 ||||||| | | |||||||||| || | || ||| | || ||||| ||||||||| Sbjct 160189 AAAGACATATTAGAGATGGTGATTTGGTCATTTTTAATCGTCAGCCAACTCTTCATAAAA 160130 Query 50366 CTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTA- 50424 |||| || | || ||| || ||| | |||||| ||||||||| Sbjct 160129 TGAGTATGATGGGTCACAGGGTAAAAGTTTTACCTTGGAGTACATTTCGTATGAATTTAA 160070 Query 50425 GCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCT 50484 ||| | ||| | | ||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 160069 GCTGT-ACTTCACCTTATAATGCTGACTTTGATGGGGATGAGATGAATTTACATGTTCCT 160011 Query 50485 CAATCATATGGA 50496 || || |||||| Sbjct 160010 CAGTC-TATGGA 160000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628511896235520