Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq22 113 3e-19 seq16 96.9 3e-14 seq12 95.1 9e-14 seq6 93.3 3e-13 seq3 93.3 3e-13 >seq22 Length=4749808 Score = 113 bits (124), Expect = 3e-19 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 637117 AAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTA 637176 ||| | ||||| |||| ||| |||||| |||| ||||| |||||| |||| |||||| Sbjct 1647899 AAAGTCATTGTTGATTTTTCAAGTCCAAACGTTGCAAAAGAGATGCATGTTGGTCATTTA 1647958 Query 637177 AGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTT 637236 | || || |||||||| || || ||||| || ||||| | | || ||| | ||| Sbjct 1647959 CGTTCCACCATTATTGGAGATAGCATCTGTAGACTACTAGAATTTTTAGGTCACAACGTT 1648018 Query 637237 TATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 637293 | | | |||||| | |||||||||||||| ||||| || |||||||| ||| || Sbjct 1648019 TTAAGGTTGAATCATATTGGTGATTGGGGAACACAATTTGGAATGTTAATCGCTCAT 1648075 >seq16 Length=6357092 Score = 96.9 bits (106), Expect = 3e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 432280 GATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGT 432339 |||| | |||||| || || |||||| | || || | ||||| || ||||||||| | | Sbjct 160504 GATTAAAAGGTAAGGAGGGCCGTATTCGTGGCAACCTTATGGGCAAACGTGTCGATTTTT 160445 Query 432340 CTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTC-TCAATGAAGTTGGTGTTCCT 432398 | || || || || ||||| ||||||| ||| |||| | | |||||||||| ||| Sbjct 160444 CGGCGCGCACTGTCATTACACCTGATCCAAAT-TTGCGAATTGACCAAGTTGGTGTACCT 160386 Query 432399 CTCATTATTGCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAT 432455 | | |||||| ||||| | |||||| ||||||||||| | |||||| ||| Sbjct 160385 CGTAGTATTGCTCAAAATTTAACTTTTCCTGAAATTGTAACTCCATTTAATATCGAT 160329 >seq12 Length=9021569 Score = 95.1 bits (104), Expect = 9e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 ||||||||||||| | ||||| | |||| |||||| ||| || ||||| || | || Sbjct 2879908 CAAAAATAGTATTACTGGGATTCATTGCAACTTGATTTTTCGCAGCATCGCCCACAAGTC 2879967 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||| || || || || | ||||| ||| ||||| | ||| ||||||| ||||| || Sbjct 2879968 TTTCCGTATCGGTGAAAGCGACATAACTTGGTGTTGTTCTATTCCCTTGATTATTCGTAA 2880027 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACA 282844 |||| || || || |||||||| | || || ||| Sbjct 2880028 TAATCTCCACCTTCCCATTTTGAAAAACGCCGACA 2880062 >seq6 Length=12171684 Score = 93.3 bits (102), Expect = 3e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || || |||||||| ||||| || || |||||||| | | ||||||| | |||||| ||| Sbjct 8582533 CCATAAGCAAGAGCAGCTGCTGTAGGCTCATTAATAACTCTAAGAACGTTTAAACCAGCA 8582474 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 |||| ||| || || || || ||||| | |||||||| ||||||||||| || Sbjct 8582473 ATTTGGCCAGCGTCCTTTGTAGCCTGCCTCTGAGAATCATTAAAGTATGCTGGTACCGTG 8582414 Query 86239 ATAACTGCTTTATT 86252 | |||||| || || Sbjct 8582413 ACAACTGCATTCTT 8582400 >seq3 Length=17417032 Score = 93.3 bits (102), Expect = 3e-13 Identities = 90/112 (80%), Gaps = 4/112 (4%) Strand=Plus/Plus Query 131183 GCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTAC 131242 ||||| || || ||||| ||||| || ||||||| |||||||| ||||||||||| | Sbjct 15308938 GCCACTATTGCTTTTGGAATGGGAATAGATAAACCTAATGTTAGATTTGTTATTCATGCC 15308997 Query 131243 GGAGCTCCCAAGAAT--ATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGG 131292 | || |||| ||| || ||||||||||||||||||| ||||||||| || Sbjct 15308998 ATA-CTTCCAA-AATCAATCGAAGGTTATTATCAAGAAAGTGGTAGAGCTGG 15309047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740509771683282