Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq806 141 3e-28 seq184 84.2 7e-11 >seq806 Length=816 Score = 141 bits (156), Expect = 3e-28 Identities = 288/423 (68%), Gaps = 6/423 (1%) Strand=Plus/Plus Query 188779 GGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTA 188838 ||||| || ||||| |||||||| | | ||| |||| |||| || | |||| Sbjct 367 GGCCCAACCGGTTCCGGTAAAACGCTGCTGGCTGAAACCCTGGCGCGCCTGCTTGATGTT 426 Query 188839 CCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTG 188898 || | | || | ||||| || | | || || || |||||||| ||||| || || Sbjct 427 CCGTTCACGATGGCGGATGCCACCACCCTGACCGAGGCCGGTTATGTGGGTGAGGACGTC 486 Query 188899 GAAAACGTATTGCTTCGTTTAATCCAAGCAGCT-GATTACGA--TATCGAATTAGCGGAA 188955 |||||| | | | | | || | || |||||||| || ||| ||| | Sbjct 487 GAAAACATCATTCAGAAACTGCTGCA-GAAGTGCGATTACGACGTACAGAA--AGCCCAG 543 Query 188956 CGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCC 189015 || || ||||| || |||||||| | || || || | | |||||||| | | | ||| Sbjct 544 CGCGGGATTGTGTACATCGATGAGATTGACAAGATCTCACGTAAATCAGACAACCCGTCC 603 Query 189016 ATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGT 189075 |||||||| || ||||| || ||||| |||||||| || | | || | ||||||||| Sbjct 604 ATTACCCGTGACGTATCGGGTGAAGGCGTACAGCAGGCGCTGCTGAAGCTGATTGAAGGT 663 Query 189076 ACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAA 189135 || ||||| ||||| || || |||||||||||||| || || || || | || | Sbjct 664 ACGGTTGCTGCCGTTCCGCCACAGGGTGGTCGTAAACATCCGCAGCAGGAGTTCCTGCAG 723 Query 189136 ATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATT 189195 | ||||| | || ||| |||| || |||||| ||||||| |||||| || || || Sbjct 724 GTTGATACCTCCAAGATCCTGTTCATCTGTGGTGGCGCGTTTGCTGGTCTGGACAAAGTT 783 Query 189196 ATC 189198 ||| Sbjct 784 ATC 786 >seq184 Length=2459 Score = 84.2 bits (92), Expect = 7e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 403939 GTGCGCCTGTAGCTCAGCTGGATAGAGCACGAGCCTTCTAAGCCCGCGGTCGTAGGTTCG 403998 ||||||| |||||||| ||||||||||| |||||||||||| ||||||||||||| Sbjct 2103 GTGCGCCCTTAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCGTAGGTTCG 2044 Query 403999 AATCCTACCAGGCG 404012 |||||||| |||| Sbjct 2043 AATCCTACAGGGCG 2030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591860286163136