Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq34 192 1e-43 seq2 168 1e-36 seq3 95.1 2e-14 >seq34 Length=1613596 Score = 192 bits (212), Expect = 1e-43 Identities = 157/191 (82%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || |||||||| ||||||| | | | ||||||||| ||||||||||||||||| | Sbjct 772942 CTTTTTGAATATTATAGTCAGATAAAGTACGACCGTCTTCAAGTTGTTTTCCAGCAAAAA 773001 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 ||| |||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||||| Sbjct 773002 TTAATCTTTGTTGATCTGGAGGGATGCCTTCTTTATCTTGTATCTTAGCTTTCACATTTT 773061 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||||||||| | ||||||||| | || || ||||| ||||| || || || || | Sbjct 773062 CAATCGTATCTGATGCTTCTACTTCTAGGGTAATAGTCTTCCCTGTTAAAGTTTTAACGA 773121 Query 82801 ATATCTGCATT 82811 | || |||||| Sbjct 773122 AGATTTGCATT 773132 >seq2 Length=17806784 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | || || || |||||||| || || ||||| || |||| |||| || Sbjct 3493398 CGAAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGATAATGTTCTTCCA 3493339 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | |||||| || ||||| || || | ||| |||||||| || |||||||| ||| Sbjct 3493338 TCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGAATTCCTTCTTTA 3493279 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||| || ||||| ||||||||||| ||||| || ||| ||||||| || || Sbjct 3493278 TCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCCAGTGTAATA 3493219 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || |||||||| || || ||||| || |||||| Sbjct 3493218 GTTTTACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||||||| || |||||||| || ||||| || || || ||||| || |||||| Sbjct 12206951 CCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAGAT 12207010 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || || || ||||| || ||||||||||| || | || || ||||| || Sbjct 12207011 AAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGA 12207070 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||| |||||||| || || |||||||| || || || || ||| ||| Sbjct 12207071 ATGCCTTCTTTATCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACT 12207130 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || |||||||| || ||||| || || || ||||| Sbjct 12207131 TCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207177 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | |||| || ||||| || || ||||| ||||| || || ||||||| Sbjct 3492055 CGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCA 3491996 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||||| |||||| |||||||||||||| | ||| |||||||| || |||||||| ||| Sbjct 3491995 TCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTA 3491936 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || ||||| ||||| ||||| || || | ||||| || | ||| || Sbjct 3491935 TCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATA 3491876 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || || || || |||||||| Sbjct 3491875 GTTTTACCAGTCAAGGTTTTAACGAAAATCTGCAT 3491841 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | |||| || ||||| || || ||||| ||||| || || ||||||| Sbjct 3493170 CGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCA 3493111 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||||| |||||| |||||||||||||| | ||| |||||||| || |||||||| ||| Sbjct 3493110 TCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTA 3493051 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || ||||| ||||| ||||| || || | ||||| || | ||| || Sbjct 3493050 TCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATA 3492991 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || || || || |||||||| Sbjct 3492990 GTTTTACCAGTCAAGGTTTTAACGAAAATCTGCAT 3492956 Score = 147 bits (162), Expect = 4e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 82648 TTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTC 82707 |||| || ||||| | |||||| || ||||| || || | |||||||||||| || |||| Sbjct 3492231 TTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATTC 3492172 Query 82708 CTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCA 82767 |||| || ||||| ||||| ||||| ||||||||||| |||||| || ||| ||||||| Sbjct 3492171 CTTCTTTGTCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCCA 3492112 Query 82768 AAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || || ||||| || || || || ||||| || |||||| Sbjct 3492111 ACGTGATGGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCATT 3492068 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||| | |||||| || || ||||| || || ||||| ||||| || || || Sbjct 12209003 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12209062 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || | ||| || ||||| || || || | || || || || || Sbjct 12209063 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12209122 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| || || |||||||| || || || || ||| ||| Sbjct 12209123 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACT 12209182 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | ||| || ||||| || ||||| ||||||||||| |||||||| ||| Sbjct 12209183 TCAAGAGTAATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCATGATT 12209233 >seq3 Length=17417032 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 198327 ACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCAT 198386 |||||||| | | |||||||| | ||||| || | |||| ||||||||||||||| Sbjct 15630492 ACACATGATAATTTGTGGAATGCTGCTCAAATGCAACTAATAAAGGAAGGAAAAATGCAT 15630433 Query 198387 AGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGAC 198446 ||||| | ||||||| ||||||||||| | | |||||||| || ||| || || Sbjct 15630432 GGTTTTCTGCGAATGTATTGGGCTAAAAAATTTTTAGAATGGACTGAAAAACCAGAGGAT 15630373 Query 198447 GCTTTGAGTTATAGT--ATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTA 198504 || |||| || || |||||| |||| ||||| || | || || ||||| | Sbjct 15630372 GCATTGA--AATGGTCAATCTATTTAAATAATAAATATAGTATCGATGGTCAAGATCCAA 15630315 Query 198505 ACGGATACGTAGGTT 198519 | ||||| || |||| Sbjct 15630314 ATGGATATGTCGGTT 15630300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981796291772923