Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 2e-14 seq34 91.5 3e-13 >seq3 Length=17417032 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 183010 ACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCAT 183069 |||||||| | | |||||||| | ||||| || | || | ||||||||||||||| Sbjct 15630492 ACACATGATAATTTGTGGAATGCTGCTCAAATGCAACTAATAAAGGAAGGAAAAATGCAT 15630433 Query 183070 AGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGAT 183129 ||||| | |||||||| ||||||||||| | | |||||||| || || || ||| Sbjct 15630432 GGTTTTCTGCGAATGTATTGGGCTAAAAAATTTTTAGAATGGACTGAAAAACCAGAGGAT 15630373 Query 183130 GCTTTGAGTTATAGT--ATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTA 183187 || |||| || || |||||| | || ||||| || | || ||| ||||| | Sbjct 15630372 GCATTGA--AATGGTCAATCTATTTAAATAATAAATATAGTATCGATGGTCAAGATCCAA 15630315 Query 183188 ACGGATACGTAGGTT 183202 | ||||| || |||| Sbjct 15630314 ATGGATATGTCGGTT 15630300 >seq34 Length=1613596 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/127 (75%), Gaps = 11/127 (9%) Strand=Plus/Plus Query 81656 TTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAAAGATT 81704 || || |||||||| ||||||| ||| | || |||||| | |||| ||| Sbjct 772944 TTTTGAATATTATAGTCAGATAAAGTACGACCGTCTTCAAGTTGTTTTCCAGCAAAAATT 773003 Query 81705 AGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTTTCA 81764 | |||||||||| ||||| | || |||| |||||||| ||||| ||||| | ||||||| Sbjct 773004 AATCTTTGTTGATCTGGAGGGATGCCTTCTTTATCTTGTATCTTAGCTTTCACATTTTCA 773063 Query 81765 ATCGTAT 81771 ||||||| Sbjct 773064 ATCGTAT 773070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903383453983520