Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 5e-13 >seq2 Length=17806784 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | ||||| | Sbjct 12207200 AAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA-TCCTCCAA 12207258 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| |||| || ||||||||||| || || |||||||| ||||| || Sbjct 12207259 TTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAAT 12207318 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | || || || | || | |||||||| Sbjct 12207319 CTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCC 12207378 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || | || || |||||||| |||||| || Sbjct 12207379 TGTTAATGTCTTAACGAAAATTTGCATGCCT 12207409 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | ||||| | Sbjct 12207428 AAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA-TCCTCCAA 12207486 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| |||| || ||||||||||| || || |||||||| ||||| || Sbjct 12207487 TTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAAT 12207546 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | || || || | || | |||||||| Sbjct 12207547 CTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCC 12207606 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || | || || |||||||| |||||| || Sbjct 12207607 TGTTAATGTCTTAACGAAAATTTGCATGCCT 12207637 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | ||||| | Sbjct 12207656 AAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA-TCCTCCAA 12207714 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| |||| || ||||||||||| || || |||||||| ||||| || Sbjct 12207715 TTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAAT 12207774 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | || || || | || | |||||||| Sbjct 12207775 CTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCC 12207834 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || | || || |||||||| |||||| || Sbjct 12207835 TGTTAATGTCTTAACGAAAATTTGCATGCCT 12207865 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | ||||| | Sbjct 12207884 AAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA-TCCTCCAA 12207942 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| |||| || ||||||||||| || || |||||||| ||||| || Sbjct 12207943 TTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAAT 12208002 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | || || || | || | |||||||| Sbjct 12208003 CTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCC 12208062 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || | || || |||||||| |||||| || Sbjct 12208063 TGTTAATGTCTTAACGAAAATTTGCATGCCT 12208093 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | ||||| | Sbjct 12208112 AAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA-TCCTCCAA 12208170 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| |||| || ||||||||||| || || |||||||| ||||| || Sbjct 12208171 TTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAAT 12208230 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | || || || | || | |||||||| Sbjct 12208231 CTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCC 12208290 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || | || || |||||||| |||||| || Sbjct 12208291 TGTTAATGTCTTAACGAAAATTTGCATGCCT 12208321 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | ||||| | Sbjct 12208340 AAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA-TCCTCCAA 12208398 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| |||| || ||||||||||| || || |||||||| ||||| || Sbjct 12208399 TTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAAT 12208458 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | || || || | || | |||||||| Sbjct 12208459 CTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCC 12208518 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || | || || |||||||| |||||| || Sbjct 12208519 TGTTAATGTCTTAACGAAAATTTGCATGCCT 12208549 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | ||||| | Sbjct 12208568 AAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA-TCCTCCAA 12208626 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| |||| || ||||||||||| || || |||||||| ||||| || Sbjct 12208627 TTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAAT 12208686 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | || || || | || | |||||||| Sbjct 12208687 CTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCC 12208746 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || | || || |||||||| |||||| || Sbjct 12208747 TGTTAATGTCTTAACGAAAATTTGCATGCCT 12208777 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | ||||| | Sbjct 12208796 AAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA-TCCTCCAA 12208854 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| |||| || ||||||||||| || || |||||||| ||||| || Sbjct 12208855 TTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGAAT 12208914 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | || || || | || | |||||||| Sbjct 12208915 CTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCC 12208974 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || | || || |||||||| |||||| || Sbjct 12208975 TGTTAATGTCTTAACGAAAATTTGCATGCCT 12209005 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | ||||| | Sbjct 12209024 AAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA-TCCTCCAA 12209082 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| |||| || ||||||||||| || || |||||||| ||||| ||| Sbjct 12209083 TTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGAT 12209142 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | || || || | || | || || || Sbjct 12209143 CTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACTTCAAGAGTAATTGTCTTCCC 12209202 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || ||||| || ||||||||| Sbjct 12209203 AGTCAATGTCTTTACAAAGATCTGCATG 12209230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483405952938680