Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq28 125 2e-23 seq16 104 6e-17 seq8 100 7e-16 >seq28 Length=2341666 Score = 125 bits (138), Expect = 2e-23 Identities = 138/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| ||| ||||| |||||| || ||||| |||||||| | |||||| | Sbjct 136887 AGACATTTATGTGATGATGATGTGGTTCTTTTTAATAGACAACCATCCTTACATAAATTA 136946 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTG-ACATTTCGATTAAATGTAAG 305424 ||| ||||| || |||| ||||||||| || | || ||| |||| |||| | | Sbjct 136947 AGTATAATGGCCCACAAAGCAAAAGTATTAGAAA-ATCGTACTTTTAGATTTAATGAATG 137005 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || ||||| || |||||||| |||||||||||||||||||||||| | ||| |||| || Sbjct 137006 TGTATGTACTCCATATAATGCTGATTTTGATGGAGATGAAATGAATTTACATTTACCACA 137065 Query 305485 A 305485 | Sbjct 137066 A 137066 >seq16 Length=6357092 Score = 104 bits (114), Expect = 6e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 305323 TGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAA 305382 ||||| ||| | || ||| | || ||| | || ||||||||| |||||||| ||| | Sbjct 160170 TGATTTGGTCATTTTTAATCGTCAGCCAACTCTTCATAAAATGAGTATGATGGGTCACAG 160111 Query 305383 AGTCAAAGTATTATCT-GGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATA 305441 || ||||| ||| || ||| | |||||||| | ||| |||| | | | ||||||| Sbjct 160110 GGTAAAAGTTTTACCTTGGAGT-ACATTTCGTATGAATTTAAGCTGTACTTCACCTTATA 160052 Query 305442 ATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 |||| || |||||||| ||||| |||||| | ||||| ||||| || Sbjct 160051 ATGCTGACTTTGATGGGGATGAGATGAATTTACATGTTCCTCAGTC 160006 >seq8 Length=10932247 Score = 100 bits (110), Expect = 7e-16 Identities = 194/283 (69%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 110522 TTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGA 110581 |||||| |||||| ||| | || ||| |||||||| ||||||||| | | ||| Sbjct 3798350 TTGCTTCCTTCTAACAATGACTGAAGATAGCATTGAAGGAATTTATGATACATTAAAAAG 3798409 Query 110582 AACTGCTCTTATTTCTAAAAACT-CTGGAGGAATTGGTATTCACGTTCATGATATTCGCT 110640 | ||| ||| || ||| || | || || |||||| | |||||| |||| | Sbjct 3798410 ATGTGCA-TTAGTTAGTAAATCTGCAGGTGGCATTGGTTTGAGTGTTCATACTATTAGAG 3798468 Query 110641 CAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700 ||||||| | | ||||| | || || || | ||| | ||||| ||| ||| Sbjct 3798469 CAAAAGGTACTAGAATCGCTGGCACAAATGGAATATCGAATGGCTTAGTTCCTATGATAA 3798528 Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCAT 110757 |||| | || | || || |||||| |||||||||| ||||||| ||| ||| Sbjct 3798529 GAGTTTATAATAATACAGCGCGATATGTTGATCAAGGTGGAAATAAGAGACCTGGGGCAT 3798588 Query 110758 TTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATT 110800 |||| || ||| | ||||| |||||| | |||||||||||||| Sbjct 3798589 TTGCCATGTATTTGGAACCGTGGCATGCTGATATATTTGAATT 3798631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186775438762177